HumanCellAtlas / data-store

Design specs and prototypes for the HCA Data Storage System (DSS, "blue box")
https://dss.staging.data.humancellatlas.org/
Other
40 stars 6 forks source link

Tombstone Spatio-temporal kidney project on 4 envs #2528

Open jahilton opened 5 years ago

jahilton commented 5 years ago

We have discovered GDPR issues for some of the data in a project. Solution is to wipe out the whole project ASAP and re-ingest only the data that is approved.

project_id: abe1a013-af7a-45ed-8c26-f3793c24a1f4

Needs to be wiped from all 4:

jahilton commented 5 years ago
prod   bundle_uuid--bundle_version
--
f7081630-0d97-4550-8b16-77008ea868a3--2019-10-03T124443.721375Z
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jahilton commented 5 years ago
dev   bundle_uuid--bundle_version
--
c02ec92e-1aa0-49ae-a2fd-ceeb4b0cbdb3--2019-08-21T142508.105155Z
4accc284-186c-4b81-9810-29314a4a6948--2019-08-22T182001.633839Z
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32b6880e-6c5c-41e4-b5b1-96b097cc52da--2019-08-14T102354.918248Z
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368cd6c7-515b-4173-9703-8a95796bba62--2019-08-22T002246.835804Z
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186c2fc5-fcc4-4de4-b577-179cf73c0d94--2019-08-14T102354.890935Z
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7e330852-f693-4303-bc83-09e6d145d737--2019-08-21T233446.728103Z
67bd4c99-a5f8-4607-8571-9c97fed0832e--2019-08-22T194041.502693Z
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67cdc6a8-9f47-4dd9-908d-9654e489361d--2019-08-14T102354.932270Z
jahilton commented 5 years ago
integration   bundle_uuid--bundle_version
--
f269045b-1b3b-40d6-86ae-398a5b699e1d--2019-08-21T200210.078086Z
81c5a0ed-50d3-4c60-b1b4-57df9862b636--2019-08-21T181457.323568Z
a182995c-83c9-4da9-8029-f73b1d742d1b--2019-08-21T203353.082780Z
daaf63cf-04ae-4335-868c-32e63af0c37a--2019-08-21T155536.803383Z
9d993f96-67d2-4640-8217-89b1ecc60028--2019-08-23T180852.874897Z
fff16441-5212-4319-bf52-9e23d0eff7eb--2019-08-14T102354.912451Z
8b7635a4-88a4-4c76-9946-6e3bebd51bfa--2019-08-14T102354.905445Z
f7081630-0d97-4550-8b16-77008ea868a3--2019-08-14T102354.909021Z
d8f7f78d-1c77-49cc-b934-28d0da11c6d0--2019-08-14T102354.922428Z
6963e95a-f81d-4bfc-9639-46da2a958d7a--2019-08-14T102354.929933Z
00005cce-dfbe-40a9-922a-e1da11a11ada--2019-08-14T102354.886777Z
10ae73ef-d2e1-4a1d-a192-cf332d850c4f--2019-08-14T102354.923587Z
499b690e-feee-4675-8531-882a62b6020c--2019-08-21T030314.315201Z
0b80acf7-2295-409f-9f33-3f05fc3f4158--2019-08-21T225005.425644Z
880a3226-d432-4ab7-b81a-4c00421c6590--2019-08-21T043953.430486Z
3acc603d-b617-49ae-aa0d-353db0aa9e7e--2019-08-21T044632.263721Z
ea25386a-dc17-453d-9312-b61995f2c3f6--2019-08-21T110750.639681Z
5c4b214d-ffd7-426b-88a2-cf611e5803f7--2019-08-14T102354.926001Z
8388fed2-1af2-4102-a578-82d3ef5ace03--2019-08-14T102354.924777Z
a36a76dd-3036-42e6-beb2-dd41e1e312b6--2019-08-14T102354.889760Z
5a37f51b-3f66-4b22-95c1-d82842265f19--2019-08-14T102354.892147Z
a0a78a4e-7891-4ef2-a22d-1bfab43ffe47--2019-08-14T102354.928677Z
2e373a6e-f531-449b-a989-eb163322ce83--2019-08-21T124434.677723Z
f838b9fe-3e03-41cf-8e1f-1f17db456975--2019-08-21T042051.677180Z
4420213f-8c68-4559-8d76-b583820a1ff3--2019-08-22T020548.734540Z
f6d920a5-63ab-4d4b-8fb7-0fe2fdbf2fcd--2019-08-21T211134.456507Z
62893d1d-91ea-4842-8d76-d6d4e67a795e--2019-08-14T102354.927286Z
ad88924f-248f-4c6e-bad9-d64495b03de1--2019-08-14T102354.933416Z
1076c830-8986-4fee-9e7a-847fe0b227c7--2019-08-14T102354.931115Z
b7e88f9e-45e4-4472-aa77-fc46886614a4--2019-08-14T102354.897147Z
e22e7f03-4917-4ab9-ba0c-31784fa62de9--2019-08-14T102354.883233Z
7b4fd692-c38d-43c6-bb5b-bf3dcbc837eb--2019-08-14T102354.916002Z
9914ac5e-772f-4347-ae33-290bd67ddf11--2019-08-21T030438.651912Z
08ca411d-c58a-487a-b7da-4d5e83732252--2019-08-21T132357.516037Z
9eb1a782-4c15-42b7-8d4a-e6dfca346fe3--2019-08-22T163826.964078Z
5c4bb0a6-705e-43a1-9714-fc7a60334bed--2019-08-22T005001.029171Z
c0e82caf-6fed-4524-9267-d97ac0a4d2f2--2019-08-21T201117.268364Z
1a26883e-d034-491c-8d0a-0e93e854eacb--2019-08-14T102354.938384Z
6086e0e1-c679-44ad-bc62-57875b216fc4--2019-08-14T102354.919583Z
4accc284-186c-4b81-9810-29314a4a6948--2019-08-22T182001.633839Z
b44a0842-b2c0-4392-91f7-57e312c0507e--2019-09-04T094719.599925Z
3b17e3c9-5f1c-49c6-b4fc-e3d658e7b731--2019-08-22T011147.980970Z
6d9faabd-5da1-4643-8f02-bce67d9fc9bb--2019-08-14T102354.917401Z
a44844d6-2728-4595-9fa7-bb6f2a34b629--2019-08-14T102354.904138Z
3c3061a7-1dc5-422e-bc14-4760b47f6ad2--2019-08-14T102354.914808Z
c02ec92e-1aa0-49ae-a2fd-ceeb4b0cbdb3--2019-08-21T142508.105155Z
0d7aee1d-a3d7-4532-903a-c531ac07998d--2019-08-14T102354.920949Z
27a43436-6e63-44ce-a2b3-80618f00b7f6--2019-08-21T025723.178682Z
88aed2c9-6537-40fe-a04c-cd58900e9abf--2019-08-21T224412.548780Z
6529d0e9-22ff-4276-99ca-884e45a5ceb3--2019-08-14T102354.900799Z
0cc25d1d-6218-4dad-ba5f-91ac4144a24b--2019-08-21T025517.596836Z
70372f87-4cd4-40d7-8c09-1ebc641e1384--2019-08-21T041147.674161Z
3bab143b-606a-4890-afa1-7dfa92370cf7--2019-08-14T102354.910265Z
4717eb27-350f-41c1-adc2-3589e17048ee--2019-08-14T102354.908184Z
b6037eec-60da-48da-85a4-b7438539a6ae--2019-08-14T102354.911620Z
328a2bf0-3f3c-4441-96a8-ddf41852e650--2019-08-14T102354.937116Z
6f01e3ae-9743-4424-983b-18b18f0ffeed--2019-08-14T102354.899650Z
002fe390-ba3f-4aa7-ae43-aa7949b09bb1--2019-08-14T102354.901697Z
368cd6c7-515b-4173-9703-8a95796bba62--2019-08-22T002246.835804Z
89a909ff-43e2-4ef9-832a-11ea6ab7689a--2019-08-22T221256.167287Z
5b8fc043-b00e-4699-b75f-19be0c7d9dc0--2019-08-21T030952.661595Z
9ca7449a-4b91-4cdd-b226-a7fbb7b1ffd0--2019-09-11T130903.205981Z
8f585ec2-54c2-4d7b-8cea-0a9ceada6c8f--2019-08-21T221542.862704Z
363aeb9a-010d-49ec-b8e0-9062552b9062--2019-08-21T061637.627527Z
2165e389-4760-4e89-98a8-49dbc0af00d0--2019-08-14T102354.888212Z
8cd7c4db-675b-4412-bb60-df0340245828--2019-08-14T102354.893522Z
7ef3700c-d2d3-4e6e-b73e-c22f3380e7c3--2019-08-14T102354.906812Z
32b6880e-6c5c-41e4-b5b1-96b097cc52da--2019-08-14T102354.918248Z
7e330852-f693-4303-bc83-09e6d145d737--2019-08-21T233446.728103Z
67bd4c99-a5f8-4607-8571-9c97fed0832e--2019-08-22T194041.502693Z
a1e2d3d2-3b47-4d20-a331-548818f3604b--2019-08-21T153446.034252Z
3013e0db-e471-4134-9e0c-b3bed2464a8e--2019-08-22T020410.008157Z
79ec8f41-fccc-46ed-af43-e63892238d77--2019-08-21T153542.733071Z
caf3a1b6-60d3-42fd-a56c-48fe0e6de571--2019-08-21T174235.336465Z
9bd51e8f-abb2-40e6-8ee2-e0afa8b6caa6--2019-08-21T174206.877310Z
0dce2a49-1d81-45a2-98c3-75c1e154e96e--2019-08-14T102354.894698Z
f840f06a-58b1-4699-a672-ef0b08fb3304--2019-08-14T102354.884120Z
c99ea041-0daf-4b25-bee9-d9691af11a5e--2019-08-14T102354.895912Z
ce1f6515-6143-4e77-b162-fe6060cc10e6--2019-08-14T102354.935952Z
4882ec6f-fe81-43d8-9446-595fbf6319da--2019-08-14T102354.881451Z
5bf86ddb-a57b-49be-b734-8b09d7259e60--2019-08-14T102354.902904Z
71a582dc-6a03-4bb4-a4f7-29bbf289d8b9--2019-08-14T102354.934753Z
0d6d1122-acf0-466d-ab0b-a131edfb663e--2019-08-14T102354.885429Z
67cdc6a8-9f47-4dd9-908d-9654e489361d--2019-08-14T102354.932270Z
6a6bd6e3-af01-4e0c-81ad-97eb0bc15db5--2019-08-21T121909.088922Z
227f2010-a6df-4c1b-9fb7-fc6cedeff8ce--2019-08-14T102354.913655Z
26dadf9e-4690-48df-b7f1-eac2b50c1462--2019-08-21T031541.262341Z
6ff1a6f0-f214-45bc-878a-f8919cb3e581--2019-08-22T060017.593244Z
284679d1-6b69-4d52-8774-c13943610299--2019-08-22T040302.065850Z
192ccf23-5847-458d-9527-c730677e7093--2019-08-22T013134.633966Z
97735720-4c1f-4b69-9463-e6c9febc2764--2019-08-21T204636.481290Z
9e91edba-447e-47d3-8095-4406520e2fe9--2019-08-21T183341.122360Z
186c2fc5-fcc4-4de4-b577-179cf73c0d94--2019-08-14T102354.890935Z
2e478e45-e8e5-402a-b41f-5a9c2f2edd3a--2019-08-14T102354.898353Z
jahilton commented 5 years ago
staging   bundle_uuid--bundle_version
--
08ca411d-c58a-487a-b7da-4d5e83732252--2019-10-03T124443.793241Z
186c2fc5-fcc4-4de4-b577-179cf73c0d94--2019-10-03T124443.747772Z
27a43436-6e63-44ce-a2b3-80618f00b7f6--2019-10-03T124443.784452Z
192ccf23-5847-458d-9527-c730677e7093--2019-10-03T124443.779983Z
1a26883e-d034-491c-8d0a-0e93e854eacb--2019-10-03T124443.798770Z
2165e389-4760-4e89-98a8-49dbc0af00d0--2019-10-03T124443.744692Z
4717eb27-350f-41c1-adc2-3589e17048ee--2019-10-03T124443.763494Z
284679d1-6b69-4d52-8774-c13943610299--2019-10-03T124443.729430Z
4882ec6f-fe81-43d8-9446-595fbf6319da--2019-10-03T124443.741554Z
6a6bd6e3-af01-4e0c-81ad-97eb0bc15db5--2019-10-03T124443.770531Z
9914ac5e-772f-4347-ae33-290bd67ddf11--2019-10-03T124443.735694Z
6529d0e9-22ff-4276-99ca-884e45a5ceb3--2019-10-03T124443.716067Z
4accc284-186c-4b81-9810-29314a4a6948--2019-10-03T124443.706146Z
a182995c-83c9-4da9-8029-f73b1d742d1b--2019-10-03T124443.712573Z
880a3226-d432-4ab7-b81a-4c00421c6590--2019-10-03T124443.774857Z
daaf63cf-04ae-4335-868c-32e63af0c37a--2019-10-03T124443.740636Z
5a37f51b-3f66-4b22-95c1-d82842265f19--2019-10-03T124443.709143Z
499b690e-feee-4675-8531-882a62b6020c--2019-10-03T124443.749980Z
6963e95a-f81d-4bfc-9639-46da2a958d7a--2019-10-03T124443.732350Z
f840f06a-58b1-4699-a672-ef0b08fb3304--2019-10-03T124443.742527Z
71a582dc-6a03-4bb4-a4f7-29bbf289d8b9--2019-10-03T124443.736581Z
67bd4c99-a5f8-4607-8571-9c97fed0832e--2019-10-03T124443.720440Z
81c5a0ed-50d3-4c60-b1b4-57df9862b636--2019-10-03T124443.757079Z
ea25386a-dc17-453d-9312-b61995f2c3f6--2019-10-03T124443.795504Z
97735720-4c1f-4b69-9463-e6c9febc2764--2019-10-03T124443.786740Z
c99ea041-0daf-4b25-bee9-d9691af11a5e--2019-10-03T124443.754109Z
d8f7f78d-1c77-49cc-b934-28d0da11c6d0--2019-10-03T124443.728149Z
f7081630-0d97-4550-8b16-77008ea868a3--2019-10-03T124443.721375Z
88aed2c9-6537-40fe-a04c-cd58900e9abf--2019-10-03T124443.796679Z
a1e2d3d2-3b47-4d20-a331-548818f3604b--2019-10-03T124443.702653Z
79ec8f41-fccc-46ed-af43-e63892238d77--2019-10-03T124443.733684Z
89a909ff-43e2-4ef9-832a-11ea6ab7689a--2019-10-03T124443.748956Z
67cdc6a8-9f47-4dd9-908d-9654e489361d--2019-10-03T124443.791109Z
f838b9fe-3e03-41cf-8e1f-1f17db456975--2019-10-03T124443.708244Z
fff16441-5212-4319-bf52-9e23d0eff7eb--2019-10-03T124443.766555Z
jahilton commented 5 years ago

Removal from Prod is the top priority. No priority ranking amongst the other three.

amarjandu commented 5 years ago

@HumanCellAtlas/data-ops

jahilton commented 5 years ago

updated the checklist to include hard deletion of the data files after tombstoning bundles. this should again occur in all envs, if applicable

amarjandu commented 5 years ago

Prod tombstone complete. https://gist.github.com/amarjandu/c3f774131642f06187e706127ca06af2

amarjandu commented 5 years ago

Staging -https://gist.github.com/amarjandu/560e139f061111f10ae3a7ab454cd83b Integration - https://gist.github.com/amarjandu/02decac5272c6d765cf9a137f4ce2974

Tombstone complete with following scripts

amarjandu commented 5 years ago

Physical Deletion Performed on integration with:

integration-gdpr.txt

Collisions in whitelist found, need to inform whitelist owners about bundles that are effected.

amarjandu commented 4 years ago

Physical Deletion on staging complete