Many projects in `dev` and `prod` contain `||` in metadata

[achave11-ucsc]

dev

Affected projects in catalog dcp2

• df88f39f-01a8-4b5b-92f4-3177d6c0f242
• d2111fac-3fc4-4f42-9b6d-32cd6a828267
• d3ac7c1b-5302-4804-b611-dad9f89c049d
• 51f02950-ee25-4f4b-8d07-59aa99bb3498
• e526d91d-cf3a-44cb-80c5-fd7676b55a1d
• 05657a59-9f9d-4bb9-b77b-24be13aa5cea
• c5f46615-68de-4cf4-bbc2-a0ae10f08243

Detailed list of occurrences

``` datarepo-dev-27ad01e5.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20210928.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-dev-5674b4eb.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20210903.differentiation_protocol "publication_doi":"10.1038/nprot.2014.158||10.1038/nature12517 ``` ``` datarepo-dev-e5bc6d76.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20211015.analysis_protocol "computational_method":"read alignment||transcript counting||quality control" ``` ``` datarepo-dev-bb8fbae4.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20210928.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-dev-b839d6c7.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20210907.cell_suspension "growth_medium":"BronchiaLife media || ALI medium" ``` ``` datarepo-dev-37639c56.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20210928.project "organization":"UK Medical Research Council||Wellcome Trust||European Union" ``` ``` datarepo-dev-aa783adb.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20210928.analysis_protocol "computational_method":"read alignment||transcript counting" ```

prod

Affected projects in catalog dcp1

• e0009214-c0a0-4a7b-96e2-d6a83e966ce0

Detailed list of occurrences

``` datarepo-224af5ae.hca_prod_e0009214c0a04a7b96e2d6a83e966ce0__20220113_dcp1_20220126_dcp1.enrichment_protocol "text":"microfluidic droplet platform|| fluorescence-activated cell sorting" ```

Affected projects in catalog dcp16

• 005d611a-14d5-4fbf-846e-571a1f874f70
• 04ad400c-58cb-40a5-bc2b-2279e13a910b
• 0562d2ae-0b8a-459e-bbc0-6357108e5da9
• 05657a59-9f9d-4bb9-b77b-24be13aa5cea
• 074a9f88-729a-455d-bca5-0ce80edf0cea
• 0b299140-25b5-4861-a69f-7651ff3f46cf
• 20f37aaf-caa1-40e6-9123-be6ce8feb2d6
• 24d0dbbc-54eb-4904-8141-934d26f1c936
• 2c041c26-f75a-495f-ab36-a076f89d422a
• 40272c3b-4697-4bd4-ba3f-82fa96b9bf71
• 425c2759-db66-4c93-a358-a562c069b1f1
• 45c2c853-d06f-4879-957e-f1366fb5d423
• 51f02950-ee25-4f4b-8d07-59aa99bb3498
• 5b328561-4a97-40ac-b7ad-6a90fc59d374
• 5b5f05b7-2482-468d-b76d-8f68c04a7a47
• 6ac8e777-f9a0-4288-b5b0-446e8eba3078
• 91af6e2f-65f2-44ec-98e0-ba4e98db22c8
• 94e4ee09-9b4b-410a-84dc-a751ad36d0df
• c0518445-3b3b-49c6-b8fc-c41daa4eacba
• c5f46615-68de-4cf4-bbc2-a0ae10f08243
• c7c54245-548b-4d4f-b15e-0d7e238ae6c8
• d2111fac-3fc4-4f42-9b6d-32cd6a828267
• d3ac7c1b-5302-4804-b611-dad9f89c049d
• d71c76d3-3670-4774-a9cf-034249d37c60
• d7b7beae-652b-4fc0-9bf2-bcda7c7115af
• df88f39f-01a8-4b5b-92f4-3177d6c0f242
• e0009214-c0a0-4a7b-96e2-d6a83e966ce0
• e526d91d-cf3a-44cb-80c5-fd7676b55a1d
• e57dc176-ab98-446b-90c2-89e0842152fd
• f86f1ab4-1fbb-4510-ae35-3ffd752d4dfc

Detailed list of occurrences

``` datarepo-d6e13093.hca_prod_df88f39f01a84b5b92f43177d6c0f242__20220119_dcp2_20220121_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-6b360d3f.hca_prod_5b5f05b72482468db76d8f68c04a7a47__20220117_dcp2_20220307_dcp14.library_preparation_protocol "catalog_number":"PN-120237||PN-120236||PN-120262" ``` ``` datarepo-4b461192.hca_prod_45c2c853d06f4879957ef1366fb5d423__20220303_dcp2_20220330_dcp15.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-17088287.hca_prod_5b3285614a9740acb7ad6a90fc59d374__20220117_dcp2_20220120_dcp12.analysis_protocol "computational_method":"Seurat||scran" ``` ``` datarepo-17088287.hca_prod_5b3285614a9740acb7ad6a90fc59d374__20220117_dcp2_20220120_dcp12.sequence_file "library_prep_id":"library_protocol_scRNA_v3||library_protocol_HTO" ``` ``` datarepo-5d6926b7.hca_prod_c7c54245548b4d4fb15e0d7e238ae6c8__20220330_dcp2_20220330_dcp15.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-bb0322f9.hca_prod_04ad400c58cb40a5bc2b2279e13a910b__20220114_dcp2_20220330_dcp15.analysis_protocol "computational_method":"CellRanger||Scanpy v.1.4.4" ``` ``` datarepo-a718a79a.hca_prod_d2111fac3fc44f429b6d32cd6a828267__20220119_dcp2_20220121_dcp12.differentiation_protocol "publication_doi":"10.1038/nprot.2014.158||10.1038/nature12517"} ``` ``` datarepo-62e87fe3.hca_prod_c5f4661568de4cf4bbc2a0ae10f08243__20220118_dcp2_20220121_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-c64a357d.hca_prod_f86f1ab41fbb4510ae353ffd752d4dfc__20220119_dcp2_20220121_dcp12.project "publications":[{"authors":["Baron M||Veres A||Wolock SL||Faust AL||Gaujoux R||Vetere A||Hyoje Ryu J||Wagner BK||Shen-Orr SS||Klein AM||Melton DA||Yanai I"] ``` ``` datarepo-589be0ea.hca_prod_0b29914025b54861a69f7651ff3f46cf__20220519_dcp2_20220519_dcp16.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-67ebf8c0.hca_prod_40272c3b46974bd4ba3f82fa96b9bf71__20220303_dcp2_20220330_dcp15.library_preparation_protocol "library_construction_kit":{"retail_name":"Single Cell 3′ Library & Gel Bead kit version 2||i7 Multiplex kit","catalog_number":"120237||120262","manufacturer":"10X Genomics||10X Genomics"} ``` ``` datarepo-4fb4619a.hca_prod_074a9f88729a455dbca50ce80edf0cea__20220107_dcp2_20220307_dcp14.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-c6955be8.hca_prod_94e4ee099b4b410a84dca751ad36d0df__20220519_dcp2_20220519_dcp16.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-458232e4.hca_prod_51f02950ee254f4b8d0759aa99bb3498__20220117_dcp2_20220120_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-145862d0.hca_prod_c05184453b3b49c6b8fcc41daa4eacba__20220213_dcp2_20220307_dcp14.analysis_protocol "computational_method":"CellRanger 2.0.2 || SoupX || Scrublet" ``` ``` datarepo-ef305f42.hca_prod_005d611a14d54fbf846e571a1f874f70__20220111_dcp2_20220307_dcp14.project "authors":["Kanton S||Boyle MJ||He Z||Santel M||Weigert A||Sanchis-Calleja F||Guijarro P||Sidow L||Fleck JS||Han D||Qian Z||Heide M||Huttner WB||Khaitovich P||Paabo S||Treutlein B||Camp JG"] ``` ``` datarepo-7defc353.hca_prod_20f37aafcaa140e69123be6ce8feb2d6__20220111_dcp2_20220114_dcp12.collection_protocol "publication_doi":"10.1093/nar/gkw928||10.1038/nature22403"} ``` ``` datarepo-7defc353.hca_prod_20f37aafcaa140e69123be6ce8feb2d6__20220111_dcp2_20220114_dcp12.differentiation_protocol "publication_doi":"10.1038/nature10648||10.1038/nbt.1529||10.1016/j.stem.2010.03.001"} ``` ``` datarepo-6eecb96e.hca_prod_2c041c26f75a495fab36a076f89d422a__20220303_dcp2_20220307_dcp14.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-921c7df9.hca_prod_e526d91dcf3a44cb80c5fd7676b55a1d__20220119_dcp2_20220121_dcp12.cell_suspension "growth_medium":"BronchiaLife media || ALI medium" ``` ``` datarepo-54af5ab6.hca_prod_91af6e2f65f244ec98e0ba4e98db22c8__20220303_dcp2_20220330_dcp15.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-3b6cd966.hca_prod_425c2759db664c93a358a562c069b1f1__20220519_dcp2_20220519_dcp16.project "laboratory":"Laboratory of Myeloid Cell Biology in Tissue Homeostasis and Regeneration||Department of Biomedical Molecular Biology, Faculty of Science", "institution":"Laboratory of Myeloid Cell Biology in Tissue Homeostasis and Regeneration||Department of Biomedical Molecular Biology, Faculty of Science||Laboratory of Myeloid Cell Biology in Tissue Damage and Inflammation" "institution":"École Polytechnique Fédérale de Lausanne (EPFL)||Swiss Institute of Bioinformatics (SIB)" ``` ``` datarepo-7796a030.hca_prod_d7b7beae652b4fc09bf2bcda7c7115af__20220119_dcp2_20220121_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-ecd5ed43.hca_prod_6ac8e777f9a04288b5b0446e8eba3078__20220303_dcp2_20220330_dcp15.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-ecd5ed43.hca_prod_6ac8e777f9a04288b5b0446e8eba3078__20220303_dcp2_20220330_dcp15.cell_suspension "genotype":"14823_sample_cells||15192_sample_cells||15209_sample_cells||15210_sample_cells" ``` ``` datarepo-1e99243c.hca_prod_d3ac7c1b53024804b611dad9f89c049d__20220119_dcp2_20220121_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting||quality control" ``` ``` datarepo-b11dcc58.hca_prod_d71c76d336704774a9cf034249d37c60__20220213_dcp2_20220214_dcp13.analysis_protocol "computational_method":"Cell Ranger v2.1.0||Seraut v2.3.0" ``` ``` datarepo-bc2fe57d.hca_prod_24d0dbbc54eb49048141934d26f1c936__20220303_dcp2_20220519_dcp16.analysis_protocol "computational_method":"CellRanger v3.0.0||pRESTO v0.5.10||IgBLAST v1.12.0||TIgGER v0.3.1||ChangeO v0.4.5||Shazam v0.1.11" ``` ``` datarepo-8d441277.hca_prod_e57dc176ab98446b90c289e0842152fd__20220119_dcp2_20220121_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-c531f177.hca_prod_0562d2ae0b8a459ebbc06357108e5da9__20220330_dcp2_20220519_dcp16.analysis_protocol "computational_method":"Drop-seq toolkit||DigitalExpression" ``` ``` datarepo-319b223a.hca_prod_e0009214c0a04a7b96e2d6a83e966ce0__20220119_dcp2_20220126_dcp12.enrichment_protocol "text":"microfluidic droplet platform|| fluorescence-activated cell sorting" ``` ``` datarepo-991fac12.hca_prod_05657a599f9d4bb9b77b24be13aa5cea__20220110_dcp2_20220214_dcp13.project "organization":"UK Medical Research Council||Wellcome Trust||European Union" "computational_method":"read alignment||transcript counting" ```

Affected projects in catalog dcp17

• 005d611a-14d5-4fbf-846e-571a1f874f70
• 04ad400c-58cb-40a5-bc2b-2279e13a910b
• 0562d2ae-0b8a-459e-bbc0-6357108e5da9
• 05657a59-9f9d-4bb9-b77b-24be13aa5cea
• 074a9f88-729a-455d-bca5-0ce80edf0cea
• 0777b9ef-91f3-468b-9dea-db477437aa1a
• 0b299140-25b5-4861-a69f-7651ff3f46cf
• 20f37aaf-caa1-40e6-9123-be6ce8feb2d6
• 24d0dbbc-54eb-4904-8141-934d26f1c936
• 2c041c26-f75a-495f-ab36-a076f89d422a
• 34da2c5f-8011-48af-a7fd-ad2f56ec10f4
• 40272c3b-4697-4bd4-ba3f-82fa96b9bf71
• 425c2759-db66-4c93-a358-a562c069b1f1
• 45c2c853-d06f-4879-957e-f1366fb5d423
• 51f02950-ee25-4f4b-8d07-59aa99bb3498
• 5b328561-4a97-40ac-b7ad-6a90fc59d374
• 5b5f05b7-2482-468d-b76d-8f68c04a7a47
• 6ac8e777-f9a0-4288-b5b0-446e8eba3078
• 7be05025-9972-493a-856f-3342a8d1b183
• 91af6e2f-65f2-44ec-98e0-ba4e98db22c8
• 94e4ee09-9b4b-410a-84dc-a751ad36d0df
• a62dae2e-cd69-4d5c-b5f8-4f7e8abdbafa
• a9f5323a-ce71-471c-9caf-04cc118fd1d7
• c0518445-3b3b-49c6-b8fc-c41daa4eacba
• c5f46615-68de-4cf4-bbc2-a0ae10f08243
• c7c54245-548b-4d4f-b15e-0d7e238ae6c8
• d2111fac-3fc4-4f42-9b6d-32cd6a828267
• d3ac7c1b-5302-4804-b611-dad9f89c049d
• d71c76d3-3670-4774-a9cf-034249d37c60
• d7b7beae-652b-4fc0-9bf2-bcda7c7115af
• df88f39f-01a8-4b5b-92f4-3177d6c0f242
• e0009214-c0a0-4a7b-96e2-d6a83e966ce0
• e526d91d-cf3a-44cb-80c5-fd7676b55a1d
• e57dc176-ab98-446b-90c2-89e0842152fd
• f86f1ab4-1fbb-4510-ae35-3ffd752d4dfc

Detailed list of occurrences

``` datarepo-d6e13093.hca_prod_df88f39f01a84b5b92f43177d6c0f242__20220119_dcp2_20220121_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-4b461192.hca_prod_45c2c853d06f4879957ef1366fb5d423__20220303_dcp2_20220330_dcp15.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-17088287.hca_prod_5b3285614a9740acb7ad6a90fc59d374__20220117_dcp2_20220120_dcp12.analysis_protocol "computational_method":"Seurat||scran","provenance" datarepo-17088287.hca_prod_5b3285614a9740acb7ad6a90fc59d374__20220117_dcp2_20220120_dcp12.sequence_file "library_protocol_scRNA_v3||library_protocol_HTO" ``` ``` datarepo-5d6926b7.hca_prod_c7c54245548b4d4fb15e0d7e238ae6c8__20220330_dcp2_20220330_dcp15.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-a718a79a.hca_prod_d2111fac3fc44f429b6d32cd6a828267__20220119_dcp2_20220121_dcp12.differentiation_protocol "publication_doi":"10.1038/nprot.2014.158||10.1038/nature12517" ``` ``` datarepo-c9a47174.hca_prod_5b5f05b72482468db76d8f68c04a7a47__20220117_dcp2_20220607_dcp17.library_preparation_protocol "catalog_number":"PN-120237||PN-120236||PN-120262" ``` ``` datarepo-eb73a0f3.hca_prod_34da2c5f801148afa7fdad2f56ec10f4__20220606_dcp2_20220607_dcp17.analysis_protocol "computational_method":"Cell Ranger v3.1.0||SCAFE (https://github.com/chung-lab/scafe)" ``` ``` datarepo-62e87fe3.hca_prod_c5f4661568de4cf4bbc2a0ae10f08243__20220118_dcp2_20220121_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-c64a357d.hca_prod_f86f1ab41fbb4510ae353ffd752d4dfc__20220119_dcp2_20220121_dcp12.project "publications":[{"authors":["Baron M||Veres A||Wolock SL||Faust AL||Gaujoux R||Vetere A||Hyoje Ryu J||Wagner BK||Shen-Orr SS||Klein AM||Melton DA||Yanai I"] ``` ``` datarepo-589be0ea.hca_prod_0b29914025b54861a69f7651ff3f46cf__20220519_dcp2_20220519_dcp16.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-67ebf8c0.hca_prod_40272c3b46974bd4ba3f82fa96b9bf71__20220303_dcp2_20220330_dcp15.library_preparation_protocol "library_construction_kit":{"retail_name":"Single Cell 3′ Library & Gel Bead kit version 2||i7 Multiplex kit","catalog_number":"120237||120262","manufacturer":"10X Genomics||10X Genomics"} ``` ``` datarepo-b79b6e00.hca_prod_7be050259972493a856f3342a8d1b183__20220606_dcp2_20220607_dcp17.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-e3d0317e.hca_prod_a9f5323ace71471c9caf04cc118fd1d7__20220606_dcp2_20220607_dcp17.analysis_protocol "computational_method":"CellRanger 3.0.2||STAR 2.6.1d||Scrublet software 0.2.1" ``` ``` `datarepo-4fb4619a.hca_prod_074a9f88729a455dbca50ce80edf0cea__20220107_dcp2_20220307_dcp14.analysis_protocol` "computational_method":"read alignment||transcript counting" ``` ``` `datarepo-91af9f1b.hca_prod_04ad400c58cb40a5bc2b2279e13a910b__20220114_dcp2_20220607_dcp17.analysis_protocol` "computational_method":"CellRanger||Scanpy v.1.4.4" ``` ``` datarepo-c6955be8.hca_prod_94e4ee099b4b410a84dca751ad36d0df__20220519_dcp2_20220519_dcp16.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-458232e4.hca_prod_51f02950ee254f4b8d0759aa99bb3498__20220117_dcp2_20220120_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-145862d0.hca_prod_c05184453b3b49c6b8fcc41daa4eacba__20220213_dcp2_20220307_dcp14.analysis_protocol "computational_method":"CellRanger 2.0.2 || SoupX || Scrublet" ``` ``` `datarepo-0c908bdf.hca_prod_005d611a14d54fbf846e571a1f874f70__20220111_dcp2_20220607_dcp17.project` "authors":["Kanton S||Boyle MJ||He Z||Santel M||Weigert A||Sanchis-Calleja F||Guijarro P||Sidow L||Fleck JS||Han D||Qian Z||Heide M||Huttner WB||Khaitovich P||Paabo S||Treutlein B||Camp JG"] ``` ``` datarepo-c1f0a228.hca_prod_425c2759db664c93a358a562c069b1f1__20220519_dcp2_20220607_dcp17.project "laboratory":"Laboratory of Myeloid Cell Biology in Tissue Homeostasis and Regeneration||Department of Biomedical Molecular Biology, Faculty of Science","address":"Technologiepark-Zwijnaarde 71, Ghent 9052, Belgium" "institution":"Laboratory of Myeloid Cell Biology in Tissue Homeostasis and Regeneration||Department of Biomedical Molecular Biology, Faculty of Science||Laboratory of Myeloid Cell Biology in Tissue Damage and Inflammation" ``` ``` datarepo-6eecb96e.hca_prod_2c041c26f75a495fab36a076f89d422a__20220303_dcp2_20220307_dcp14.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-10a33a05.hca_prod_a62dae2ecd694d5cb5f84f7e8abdbafa__20220606_dcp2_20220607_dcp17.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-921c7df9.hca_prod_e526d91dcf3a44cb80c5fd7676b55a1d__20220119_dcp2_20220121_dcp12.cell_suspension "growth_medium":"BronchiaLife media || ALI medium" ``` ``` datarepo-54af5ab6.hca_prod_91af6e2f65f244ec98e0ba4e98db22c8__20220303_dcp2_20220330_dcp15.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-7796a030.hca_prod_d7b7beae652b4fc09bf2bcda7c7115af__20220119_dcp2_20220121_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-ecd5ed43.hca_prod_6ac8e777f9a04288b5b0446e8eba3078__20220303_dcp2_20220330_dcp15.analysis_protocol "computational_method":"read alignment||transcript counting" datarepo-ecd5ed43.hca_prod_6ac8e777f9a04288b5b0446e8eba3078__20220303_dcp2_20220330_dcp15.cell_suspension "genotype":"14823_sample_cells||15192_sample_cells||15209_sample_cells||15210_sample_cells" ``` ``` datarepo-1e99243c.hca_prod_d3ac7c1b53024804b611dad9f89c049d__20220119_dcp2_20220121_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting||quality control" ``` ``` datarepo-b11dcc58.hca_prod_d71c76d336704774a9cf034249d37c60__20220213_dcp2_20220214_dcp13.analysis_protocol "computational_method":"Cell Ranger v2.1.0||Seraut v2.3.0" ``` ``` datarepo-bc2fe57d.hca_prod_24d0dbbc54eb49048141934d26f1c936__20220303_dcp2_20220519_dcp16.analysis_protocol "computational_method":"CellRanger v3.0.0||pRESTO v0.5.10||IgBLAST v1.12.0||TIgGER v0.3.1||ChangeO v0.4.5||Shazam v0.1.11" ``` ``` datarepo-8d441277.hca_prod_e57dc176ab98446b90c289e0842152fd__20220119_dcp2_20220121_dcp12.analysis_protocol "computational_method":"read alignment||transcript counting" ``` ``` datarepo-4cc7b9fb.hca_prod_20f37aafcaa140e69123be6ce8feb2d6__20220111_dcp2_20220607_dcp17.collection_protocol "publication_doi":"10.1093/nar/gkw928||10.1038/nature22403" ``` ``` datarepo-4cc7b9fb.hca_prod_20f37aafcaa140e69123be6ce8feb2d6__20220111_dcp2_20220607_dcp17.differentiation_protocol "publication_doi":"10.1038/nature10648||10.1038/nbt.1529||10.1016/j.stem.2010.03.001" ``` ``` datarepo-c531f177.hca_prod_0562d2ae0b8a459ebbc06357108e5da9__20220330_dcp2_20220519_dcp16.analysis_protocol "computational_method":"Drop-seq toolkit||DigitalExpression" ``` ``` datarepo-319b223a.hca_prod_e0009214c0a04a7b96e2d6a83e966ce0__20220119_dcp2_20220126_dcp12.enrichment_protocol "method":{"text":"microfluidic droplet platform|| fluorescence-activated cell sorting","ontology":"EFO:0009108","ontology_label":"fluorescence-activated cell sorting"} ``` ``` datarepo-991fac12.hca_prod_05657a599f9d4bb9b77b24be13aa5cea__20220110_dcp2_20220214_dcp13.project "organization":"UK Medical Research Council||Wellcome Trust||European Union" ``` ``` datarepo-625580ba.hca_prod_0777b9ef91f3468b9deadb477437aa1a__20220330_dcp2_20220330_dcp15.analysis_protocol "computational_method":"read alignment||transcript counting" ```

[hannes-ucsc]

This was initially discussed on Slack. Since then more instances of this problem have accumulated.

[melainalegaspi]

@hannes-ucsc : "@theathorn spike to follow up with the wrangling teams and ingest. EBI ingest should implement a validation rule that rejects spreadsheets with single valued cells containing a joiner. The invariant condition should be that metadata in a staging area contains no joiners."

[theathorn]

Added this issue to the July 5th post-demo discussion agenda.

[theathorn]

Check if prod projects fixed in dcp19 release.

[achave11-ucsc]

Only one affected project was identified in dcp19:

• 425c2759-db66-4c93-a358-a562c069b1f1

Detailed list of occurrences

``` datarepo-bc41fa3c.hca_prod_425c2759db664c93a358a562c069b1f1__20220519_dcp2_20220804_dcp19.project "laboratory":"Laboratory of Myeloid Cell Biology in Tissue Homeostasis and Regeneration||Department of Biomedical Molecular Biology, Faculty of Science" ```

[theathorn]

Affected project: Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches.

[theathorn]

Slack thread for Wei: "We will update this for release 20. We are running into an issue with ontology updates."

[theathorn]

Assignee to check dcp20 to confirm there are no projects remaining in prod with this issue.

[achave11-ucsc]

No metadata was found to contain the unwanted character (||) in the dcp20 catalog.

[hannes-ucsc]

We still need to copy updated snapshots from prod to dev for the projects listed in the the description under dev.

[melainalegaspi]

@hannes-ucsc : "reached out to Nate, no response yet."

[dsotirho-ucsc]

@hannes-ucsc: "Nate tentatively agreed to put this on the September / October timeline. I still need to get the Jira ticket reference from Nate."

[hannes-ucsc]

I asked for the ref (https://humancellatlas.slack.com/archives/C9XD6L0AD/p1664327139444239?thread_ts=1663606673.207269&cid=C9XD6L0AD).

[hannes-ucsc]

https://broadworkbench.atlassian.net/browse/DI-126

We need to park this ticket until that JIRA ticket is done.

[hannes-ucsc]

@theathorn should watch this ticket (click the button on the ticket).

[theathorn]

DI-126 is in progress.

[theathorn]

DI-126 is "Waiting".

[theathorn]

From Slack thread: The seven snapshots have been added to the HCA Dev tracking sheet here: https://docs.google.com/spreadsheets/d/1yYiB3TrX0wvLCHvtWY1GTZZcAf5MmMREgn52OKCHsqs/edit?pli=1#gid=1005857707

[dsotirho-ucsc]

Assignee to verify that all occurrences of || have been fixed.

[dsotirho-ucsc]

Confirmed the character sequence || does not occur in any of the tables from the following seven snapshots:

• datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215
• datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215
• datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215
• datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215
• datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215
• datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215
• datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215

Full list of tables scanned

``` Validating datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215. PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.aggregate_generation_protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.analysis_file` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.analysis_process` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.analysis_protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.cell_line` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.cell_suspension` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.collection_protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.differentiation_protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.dissociation_protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.donor_organism` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.enrichment_protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.image_file` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.imaged_specimen` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.imaging_preparation_protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.imaging_protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.ipsc_induction_protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.library_preparation_protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.links` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.organoid` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.process` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.project` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.reference_file` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.sequence_file` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.sequencing_protocol` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.specimen_from_organism` PASS: `datarepo-dev-2a4ab485.hca_dev_d2111fac3fc44f429b6d32cd6a828267__20210830_20230215.supplementary_file` Validating datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215. PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.aggregate_generation_protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.analysis_file` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.analysis_process` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.analysis_protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.cell_line` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.cell_suspension` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.collection_protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.differentiation_protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.dissociation_protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.donor_organism` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.enrichment_protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.image_file` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.imaged_specimen` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.imaging_preparation_protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.imaging_protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.ipsc_induction_protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.library_preparation_protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.links` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.organoid` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.process` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.project` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.reference_file` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.sequence_file` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.sequencing_protocol` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.specimen_from_organism` PASS: `datarepo-dev-3d6d24ad.hca_dev_05657a599f9d4bb9b77b24be13aa5cea__20210827_20230215.supplementary_file` Validating datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215. PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.aggregate_generation_protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.analysis_file` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.analysis_process` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.analysis_protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.cell_line` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.cell_suspension` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.collection_protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.differentiation_protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.dissociation_protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.donor_organism` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.enrichment_protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.image_file` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.imaged_specimen` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.imaging_preparation_protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.imaging_protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.ipsc_induction_protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.library_preparation_protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.links` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.organoid` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.process` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.project` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.reference_file` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.sequence_file` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.sequencing_protocol` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.specimen_from_organism` PASS: `datarepo-dev-e1712bfa.hca_dev_e526d91dcf3a44cb80c5fd7676b55a1d__20210902_20230215.supplementary_file` Validating datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215. PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.aggregate_generation_protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.analysis_file` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.analysis_process` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.analysis_protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.cell_line` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.cell_suspension` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.collection_protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.differentiation_protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.dissociation_protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.donor_organism` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.enrichment_protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.image_file` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.imaged_specimen` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.imaging_preparation_protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.imaging_protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.ipsc_induction_protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.library_preparation_protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.links` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.organoid` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.process` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.project` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.reference_file` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.sequence_file` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.sequencing_protocol` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.specimen_from_organism` PASS: `datarepo-dev-27c50fbc.hca_dev_c5f4661568de4cf4bbc2a0ae10f08243__20210827_20230215.supplementary_file` Validating datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215. PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.aggregate_generation_protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.analysis_file` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.analysis_process` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.analysis_protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.cell_line` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.cell_suspension` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.collection_protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.differentiation_protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.dissociation_protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.donor_organism` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.enrichment_protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.image_file` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.imaged_specimen` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.imaging_preparation_protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.imaging_protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.ipsc_induction_protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.library_preparation_protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.links` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.organoid` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.process` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.project` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.reference_file` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.sequence_file` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.sequencing_protocol` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.specimen_from_organism` PASS: `datarepo-dev-8709b362.hca_dev_df88f39f01a84b5b92f43177d6c0f242__20210827_20230215.supplementary_file` Validating datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215. PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.aggregate_generation_protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.analysis_file` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.analysis_process` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.analysis_protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.cell_line` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.cell_suspension` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.collection_protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.differentiation_protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.dissociation_protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.donor_organism` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.enrichment_protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.image_file` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.imaged_specimen` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.imaging_preparation_protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.imaging_protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.ipsc_induction_protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.library_preparation_protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.links` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.organoid` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.process` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.project` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.reference_file` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.sequence_file` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.sequencing_protocol` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.specimen_from_organism` PASS: `datarepo-dev-b46086a9.hca_dev_51f02950ee254f4b8d0759aa99bb3498__20210827_20230215.supplementary_file` Validating datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215. PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.aggregate_generation_protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.analysis_file` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.analysis_process` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.analysis_protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.cell_line` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.cell_suspension` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.collection_protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.differentiation_protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.dissociation_protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.donor_organism` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.enrichment_protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.image_file` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.imaged_specimen` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.imaging_preparation_protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.imaging_protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.ipsc_induction_protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.library_preparation_protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.links` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.organoid` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.process` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.project` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.reference_file` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.sequence_file` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.sequencing_protocol` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.specimen_from_organism` PASS: `datarepo-dev-1005632d.hca_dev_d3ac7c1b53024804b611dad9f89c049d__20210827_20230215.supplementary_file` ```