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ERROR: test__generate_yaml_full_schema_template__success (tests.template.test_schema_template.TestSchemaTemplate)
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Traceback (most recent call last):
File "/home/travis/build/HumanCellAtlas/ingest-client/tests/template/test_schema_template.py", line 348, in test__generate_yaml_full_schema_template__success
self.assertEqual(SortedDict(yaml.load(yaml_representation, Loader=yaml.FullLoader)),
File "/home/travis/virtualenv/python3.6.7/lib/python3.6/site-packages/yaml/__init__.py", line 114, in load
return loader.get_single_data()
File "/home/travis/virtualenv/python3.6.7/lib/python3.6/site-packages/yaml/constructor.py", line 43, in get_single_data
return self.construct_document(node)
File "/home/travis/virtualenv/python3.6.7/lib/python3.6/site-packages/yaml/constructor.py", line 52, in construct_document
for dummy in generator:
File "/home/travis/virtualenv/python3.6.7/lib/python3.6/site-packages/yaml/constructor.py", line 404, in construct_yaml_map
value = self.construct_mapping(node)
File "/home/travis/virtualenv/python3.6.7/lib/python3.6/site-packages/yaml/constructor.py", line 210, in construct_mapping
return super().construct_mapping(node, deep=deep)
File "/home/travis/virtualenv/python3.6.7/lib/python3.6/site-packages/yaml/constructor.py", line 135, in construct_mapping
value = self.construct_object(value_node, deep=deep)
File "/home/travis/virtualenv/python3.6.7/lib/python3.6/site-packages/yaml/constructor.py", line 92, in construct_object
data = constructor(self, node)
File "/home/travis/virtualenv/python3.6.7/lib/python3.6/site-packages/yaml/constructor.py", line 420, in construct_undefined
node.start_mark)
yaml.constructor.ConstructorError: could not determine a constructor for the tag 'tag:yaml.org,2002:python/object/apply:collections.OrderedDict'
in "<unicode string>", line 33, column 23:
timecourse.value: !!python/object/apply:collection ...
It's just a python library. We can still use it as long as we want but if there are issues in that version, fixes will be done on top of the latest version.
Test is failing when PyYaml 5.2 is being used:
PyYaml 5.2 was released 2nd Dec 2019, https://pypi.org/project/PyYAML/#history.
Temporarily pinned the version of PyYaml to be equal to 5.1