For which schema is a change/update being suggested?
Create a new 'hca_bionetwork' module and add it to project.json
What should the change/update be?
Creating four fields as part of the 'hca_bionetwork' module and adding them to project.json
1. HCA Bionetworks
I would like to add a new field - Project.hca_bionetwork.name - to this schema. This will allow data contributors to denote if the project is part of a HCA bionetwork and if so, which one.
This update constitutes a minor change to the schema(s) it affects.
Field name: project.hca_bionetwork.name
Field description: A field describing if the project is part of an HCA Bionetwork (e.g. Kidney). Enter ‘No’ if the project is not part of an HCA Bionetwork
Field type: array
Required: no
Examples: Kidney; Lung; No
CV or enum: enum
2. HCA Tissue Atlas
I would like to add a new field - Project.hca_bionetwork.hca_tissue_atlas - to this schema. This will allow data contributors to denote if the project is part of a HCA Tissue Atlas and if so, which one. In this case, a Tissue Atlas represents a singular h5ad file.
This update constitutes a minor change to the schema(s) it affects.
Field name: project.hca_bionetwork.hca_tissue_atlas
Field description: A field describing if the project is part of a HCA Tissue Atlas (e.g. Kidney).
Field type: string, array
Required: no
Examples: Brain Alzheimer's Atlas
CV or enum: Free Text
3. HCA Tissue Atlas Version
I would like to add a new field - Project.hca_bionetwork.hca_tissue_atlas_version - to this schema. This will allow data contributors to denote what version of the Tissue Atlas is associated with this publication (e.g. v1.0; v2.0)
This update constitutes a minor change to the schema(s) it affects.
Field name: project.hca_bionetwork.hca_tissue_atlas_version
Field description: A field describing the version of the HCA Tissue Atlas is associated with the publication (e.g. v1.0; v2.0)
Field type: string, array
Required: no
Examples: 'v1.0; v2.0'
CV or enum: REGEX
2. Integrated project
I would like to add a new field - Project.hca_bionetwork.atlas_project - to this schema. This will allow data contributors to denote if the publication is the HCA Tissue Atlas publication which integrates data from other projects within the atlas.
This update constitutes a minor change to the schema(s) it affects.
Field name: project.hca_bionetwork.atlas_project
Field description: A field describing if the project integrates data from other publications.
Enter ‘Yes’ if this project is a HCA Tissue Atlas and it integrates data from all other datasets. Enter ‘No’, if this project's data is being integrated.
Field type: string
Required: no
Examples: 'Yes; No'
CV or enum: enum
Motivation
Biological Network Data Contributors need to be able to denote if
a) Their project is part of a HCA Bionetwork
b) Their project is part of a HCA Tissue Atlas
c) What version of the HCA Tissue Atlas the project is a part of
b) Whether the project is the 'Atlas Project' which draws data from other projects, or the project is a project from which data is being integrated
After a meeting with Gabby, Dave, Will, Parisa, Ida and Wei an executive decision was made to add four fields to the Project module. Edited the issue accordingly.
For which schema is a change/update being suggested?
Create a new 'hca_bionetwork' module and add it to project.json
What should the change/update be?
Creating four fields as part of the 'hca_bionetwork' module and adding them to project.json
1. HCA Bionetworks
I would like to add a new field -
Project.hca_bionetwork.name
- to this schema. This will allow data contributors to denote if the project is part of a HCA bionetwork and if so, which one.This update constitutes a minor change to the schema(s) it affects.
2. HCA Tissue Atlas
I would like to add a new field -
Project.hca_bionetwork.hca_tissue_atlas
- to this schema. This will allow data contributors to denote if the project is part of a HCA Tissue Atlas and if so, which one. In this case, a Tissue Atlas represents a singular h5ad file.This update constitutes a minor change to the schema(s) it affects.
3. HCA Tissue Atlas Version
I would like to add a new field -
Project.hca_bionetwork.hca_tissue_atlas_version
- to this schema. This will allow data contributors to denote what version of the Tissue Atlas is associated with this publication (e.g. v1.0; v2.0)This update constitutes a minor change to the schema(s) it affects.
2. Integrated project
I would like to add a new field -
Project.hca_bionetwork.atlas_project
- to this schema. This will allow data contributors to denote if the publication is the HCA Tissue Atlas publication which integrates data from other projects within the atlas.This update constitutes a minor change to the schema(s) it affects.
Motivation
Biological Network Data Contributors need to be able to denote if a) Their project is part of a HCA Bionetwork b) Their project is part of a HCA Tissue Atlas c) What version of the HCA Tissue Atlas the project is a part of b) Whether the project is the 'Atlas Project' which draws data from other projects, or the project is a project from which data is being integrated