For which schema is a change/update being suggested?
I would like to request an update to the analysis_protocol.json schema.
What should the change/update be?
I would like to add a new field - gene_annotation_version - to this schema to allow data contributors to record the Ensembl release version accession number or NCBI RefSeq assembly version used for gene annotation.
This update constitutes a minor change to the schema it affects.
What new field(s) need to be changed/added?
* Field name: gene_annotation_version
* Field description: The Ensembl release version accession number or NCBI RefSeq assembly version used for gene annotation.
* Field type: string
* Required: no
* Examples: v110; GCF_000001405.40; GCF_000001635.27
* CV or enum: REGEX
Why is the change requested?
This field is needed to record the specific Ensembl release version accession number or NCBI RefSeq assembly version.
Is one of the upcoming Tier 1 metadata proposed from HCA Integration Teams & Bionetworks
Possible source of batch effect and confounder for some biological analysis
For which schema is a change/update being suggested?
I would like to request an update to the
analysis_protocol.jsonschema.What should the change/update be?
I would like to add a new field -
gene_annotation_version- to this schema to allow data contributors to record the Ensembl release version accession number or NCBI RefSeq assembly version used for gene annotation.This update constitutes a minor change to the schema it affects.
What new field(s) need to be changed/added?
Why is the change requested?
This field is needed to record the specific Ensembl release version accession number or NCBI RefSeq assembly version. Is one of the upcoming Tier 1 metadata proposed from HCA Integration Teams & Bionetworks