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HumanCellAtlas / ontology

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Jiarui data set library prep ontologies #45

Closed cjvillar closed 4 years ago

cjvillar commented 4 years ago

For new term requests, please provide the following information:

library construction method ontology_label and id for Seq-Well, CEL-Seq2, and sci-RNA-seq to below this term OBI_0000711

Preferred term label

sci-RNA-seq needs a term

Please look in the hierarchy in a browser such as OLS

Jiarui dataset

zperova commented 4 years ago

@cjvillar It looks like your changes did get saved in this ticket.

zoependlington commented 4 years ago

@cjvillar Could you provide a description for the new term for sci-RNA-seq please? And any references to papers etc. Thanks!

Also just to confirm, you would like all adding as a child of library preparation?

cjvillar commented 4 years ago

Hi Zoe, Here is a good description: https://teichlab.github.io/scg_lib_structs/methods_html/sci-RNA-seq.html

Here is a paper: https://science.sciencemag.org/content/357/6352/661

Yes, please add this as a child of lib prep (OBI_0000711)

zoependlington commented 4 years ago

sci-RNA-seq is http://www.ebi.ac.uk/efo/EFO_0010550.

Everything you've requested is also now sitting under library preparation.

You should see this after the next release (17th December).