search

HumanCellAtlas / ontology

3 stars 1 forks source link

Have Smart-seq and Smart-seq2 occur within single cell library construction #58

Closed mshadbolt closed 4 years ago

mshadbolt commented 4 years ago

Currently Smart-seq: EFO:0008930 and Smart-seq2: EFO:0008931 are within the EFO library preparation hierarchy but don't occur within single cell library construction: EFO:0010183 when they are single cell library construction methods. I think they should either be moved or should also be in this part of the hierarchy. They should potentially come under Smart-like: EFO:0010184 but will leave it up to an ontology expert to place them correctly

(https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOBI_0000711&viewMode=All&siblings=false)

mshadbolt commented 4 years ago

Also it seems like many of the techniques within library preparation are exclusively single cell methods so might be worth doing a general review to see which should be moved

paolaroncaglia commented 4 years ago

Hi @mshadbolt , I'll transfer this issue to the EFO tracker, and I'll assign it to myself to look into in the (hopefully near) future. Thanks. (Correction: I can't transfer it, so I'll copy the text and close this ticket.)