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HumanCellAtlas / ontology

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Update cell ontology to include new terms #59

Closed mshadbolt closed 3 years ago

mshadbolt commented 4 years ago

@zoependlington I was just curating some cell types and I noticed that e.g. pulmonary ionocyte (https://www.ebi.ac.uk/ols/ontologies/cl/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FCL_0017000&viewMode=All&siblings=false) exists in the EBI OLS but not in our own HCAO Screenshot 2020-04-27 at 15 54 14

Can you please update for the new release? Not sure if there are any other terms that need to be added but if there is a way to check and update that would be grand! Thanks!

paolaroncaglia commented 4 years ago

@mshadbolt It looks like this term is not in HCAO OLS yet. I made a note to discuss and address at my next meeting with @zoependlington and @dosumis , it falls in the broader context of establishing a procedure to ensure that all e.g. CL terms created for HCAO actually end up in HCAO (possibly via subset tags). P.S. Quick thought: an empyrical way to check if there are other "missing" terms might be to search for closed tickets in the CL tracker that mention HCA/HCAO, were opened by HCA curators, or similar.

paolaroncaglia commented 3 years ago

@mshadbolt FYI: Zoe and David edited the HCAO pipeline and 'pulmonary ionocyte' should now be included in HCAO, but you'll need to wait until the next HCAO release, which is scheduled for next Thursday Dec 3rd. I'll leave this ticket open so we don't forget to check. Thanks.

paolaroncaglia commented 3 years ago

@mshadbolt I confirm that 'pulmonary ionocyte' is now in the HCAO release. It'll be visible in public OLS in about a day. Thanks.