HumanCellAtlas / ontology

3 stars 1 forks source link

Modify HCAO build pipeline to include "added_for_HCA" tags #71

Closed paolaroncaglia closed 3 years ago

paolaroncaglia commented 3 years ago

As agreed with @dosumis , @zoependlington and Human Cell Atlas curators, I'm adding subset tags labelled "added_for_HCA" to CL, Uberon and EFO. We'll use these to ensure that all terms created for HCA are automatically retrieved when building HCAO. When the tags are all in (i.e. when https://github.com/obophenotype/cell-ontology/issues/826, https://github.com/obophenotype/uberon/issues/1700 and https://github.com/EBISPOT/efo/issues/920 are all committed and released in the respective ontologies), @dosumis and @zoependlington will modify the HCAO build pipeline. First try filter - Zoe has an example. Thank you both.

paolaroncaglia commented 3 years ago

Update/note for self: As of today Feb 18th, the subset tag "added_for_HCA" has been

All is ready to include the tag in the pipeline.

paolaroncaglia commented 3 years ago

Update: @zoependlington added the subset added_for_hca pipeline to the Makefile, so I'll close this ticket.