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new term request - barcoded plate-based single cell RNA-seq #76

Closed ami-day closed 3 years ago

ami-day commented 3 years ago

Preferred term label

barcoded plate-based single cell RNA-seq

Synonyms

Textual definition

A single-cell RNA sequencing library construction method that generates barcodes libraries and is plate-based. An example would be a plate-based method that is not Smart-seq2 or a modified, barcoded version of Smart-seq2.

Suggested parent term

single-cell library construction https://www.ebi.ac.uk/ols/ontologies/efo/terms?iri=http%3A%2F%2Fwww.ebi.ac.uk%2Fefo%2FEFO_0010183&viewMode=All&siblings=false

Use case

To be used in HCA metadata to indicate a single-cell library construction method.

ami-day commented 3 years ago

Hi @paolaroncaglia we would like to request a new library construction method ontology term. Is this still the correct place to enter our HCA ontology requests? Many thanks!

paolaroncaglia commented 3 years ago

Hi @ami-day , This particular term is in scope for EFO, so I'll make a ticket there. For requests for new cell type or anatomy terms, @mshadbolt drafted a decision-tree document but I don't have the link handy, sorry. In general though, I think that @zoependlington was planning to investigate if we should move all HCA ontology requests to another tracker. I'm not sure if she has any update. For now, I'd say it's ok to enter them here so they're all in one place. Thanks.

paolaroncaglia commented 3 years ago

Note for self: this term request was moved to https://github.com/EBISPOT/efo/issues/958, so this HCAO ticket may be closed when the points in my previous comment are addressed. Update 15/2/21: we'll discuss what tracker should be used for HCA ontology requests at our next meeting.