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HumanCellAtlas / ontology

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[ITR] Nuclear RNA extract #95

Closed rachadele closed 2 years ago

rachadele commented 2 years ago

Source ontology identifier

OBI:0000862

Destination ontology

HCAO

Preferred term label

nuclear RNA extract

Textual definition

A RNA extract that is the output of an extraction process in which RNA molecules found in the nucleus, including mRNA precursors (pre-mRNA), are extracted.

Suggested parent term

RNA extract

Use case

Used for input nucleic acid molecule in HCA library preparation schema

Attribution

https://orcid.org/0000-0002-7431-4139

paolaroncaglia commented 2 years ago

Hi @rachadele , What branch of the HCA ontology would you need the term to be in, please? Asking because the parent you suggest isn't in HCAO. There are RNA terms under 'biological macromolecule', but I'm not sure if that branch is compatible with the HCA library preparation schema. I'm attaching a screenshot. Thanks.

Screen Shot 2021-11-08 at 18 31 24

rachadele commented 2 years ago

I think it should go under "RNA". Sorry for the confusion!

paolaroncaglia commented 2 years ago

@rachadele Thanks, I'll create an EFO term for this, so I've moved the task to an EFO ticket and I'll close this one.