HumanCellAtlas sctools issues

HumanCellAtlas / sctools

Utilities for large scale distributed single cell data processing

https://sctools.readthedocs.io

BSD 3-Clause "New" or "Revised" License

24 stars 8 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

[Snyk] Security upgrade setuptools from 40.4.3 to 70.0.0

#131 Bento007 opened 3 months ago
0
[Snyk] Security upgrade zipp from 3.15.0 to 3.19.1

#130 DailyDreaming opened 4 months ago
0
[Snyk] Security upgrade urllib3 from 1.24.3 to 1.26.19

#129 Fab-T opened 4 months ago
0
[Snyk] Security upgrade requests from 2.20.0 to 2.32.0

#128 DailyDreaming opened 5 months ago
0
[Snyk] Security upgrade idna from 2.7 to 3.7

#127 rhiananthony opened 7 months ago
0
[Snyk] Security upgrade black from 19.3b0 to 24.3.0

#126 DailyDreaming opened 7 months ago
0
[Snyk] Security upgrade urllib3 from 1.24.3 to 1.26.18

#125 Bento007 opened 1 year ago
0
[Snyk] Security upgrade urllib3 from 1.24.3 to 1.26.17

#124 DailyDreaming opened 1 year ago
0
[Snyk] Security upgrade scipy from 1.5.2 to 1.8.0

#123 rhiananthony opened 1 year ago
0
[Snyk] Security upgrade scipy from 1.5.2 to 1.10.0rc1

#122 rhiananthony opened 1 year ago
0
[Snyk] Security upgrade requests from 2.20.0 to 2.31.0

#121 Fab-T opened 1 year ago
0
[Snyk] Security upgrade setuptools from 40.4.3 to 65.5.1

#120 snyk-bot opened 1 year ago
0
Bump setuptools from 40.4.3 to 65.5.1

#119 dependabot[bot] opened 1 year ago
0
[Snyk] Security upgrade setuptools from 40.4.3 to 65.5.1

#118 adrazhi opened 1 year ago
0
[Snyk] Fix for 5 vulnerabilities

#117 snyk-bot opened 1 year ago
0
[Snyk] Security upgrade numpy from 1.19.1 to 1.22.2

#116 snyk-bot opened 1 year ago
0
[Snyk] Security upgrade setuptools from 40.4.3 to 65.5.1

#115 DailyDreaming opened 1 year ago
0
[Snyk] Security upgrade numpy from 1.19.1 to 1.22.2

#114 DailyDreaming opened 1 year ago
0
clean up metricgatherer.cpp in preparation for adding UmiMetricGatherer

#113 fredlas closed 1 year ago
0
[Snyk] Security upgrade numpy from 1.19.1 to 1.22.2

#112 Bento007 opened 2 years ago
0
Fastq slideseq sample

#111 khajoue2 closed 2 years ago
0
[Snyk] Security upgrade numpy from 1.19.1 to 1.22.2

#110 adrazhi opened 2 years ago
0
added a build script for the docker

#109 khajoue2 closed 2 years ago
0
Sampling fastq for slideseq data

#108 khajoue2 closed 2 years ago
1
Stop truncating avg_cell_barcode_qual to integer

#107 fredlas closed 2 years ago
0
Updated Makefile and Dockerfile

#106 khajoue2 closed 2 years ago
0
Fixes to compile sctools without patches

#105 khajoue2 closed 2 years ago
0
add --mitochondrial-gene-names-filename option to TagSort

#104 fredlas closed 2 years ago
0
Overhaul concurrency and memory management in htslib_tagsort.cpp

#103 fredlas closed 2 years ago
0
Overhaul and consolidate fastqprocess.cpp and fastq_slideseq.cpp

#102 fredlas closed 2 years ago
0
Cleanup/overhaul, fixed file leak

#101 fredlas closed 2 years ago
0
delete fastqpreprocessing executables from repo, add them to .gitignore

#100 fredlas closed 2 years ago
0
add -y to apt-get upgrade in Dockerfile

#99 fredlas closed 2 years ago
0
format cleanup: applied a consistent style, whitespace+indent cleanup

#98 fredlas closed 2 years ago
0
Bump numpy from 1.19.1 to 1.22.0

#97 dependabot[bot] opened 2 years ago
0
Sideseq metrics

#96 khajoue2 closed 2 years ago
0
Tools to process slideseq data

#95 khajoue2 closed 2 years ago
0
Process fastqs with costume read structures

#94 khajoue2 closed 2 years ago
0
[Snyk] Security upgrade numpy from 1.19.1 to 1.22.2

#93 snyk-bot opened 2 years ago
0
added option to output-format as either FASTQ or BAM

#92 kishorikonwar closed 2 years ago
1
[Snyk] Security upgrade numpy from 1.19.1 to 1.22.0

#91 snyk-bot opened 2 years ago
0
[Snyk] Security upgrade numpy from 1.19.1 to 1.22.0rc1

#90 snyk-bot opened 2 years ago
0
[Snyk] Security upgrade urllib3 from 1.24.3 to 1.26.5

#89 snyk-bot opened 3 years ago
0
Metric computation

#88 kishorikonwar closed 3 years ago
0
updated to change uint32 to uint64 for file size and disabled EOF requirement for gz files

#87 kishorikonwar closed 4 years ago
0
Kmk v3 fix

#86 kishorikonwar closed 4 years ago
0
[Snyk] Security upgrade urllib3 from 1.24.3 to 1.25.9

#85 snyk-bot opened 4 years ago
0
GL-1148: update_sctools_deps

#84 nikellepetrillo closed 4 years ago
3
Update README.rst

#83 amcnicho closed 2 years ago
0
A new step call fastqprocessing for Optimus to speed up

#82 kishorikonwar closed 4 years ago
4