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HumanCellAtlas / sctools

Utilities for large scale distributed single cell data processing
https://sctools.readthedocs.io
BSD 3-Clause "New" or "Revised" License
24 stars 8 forks source link

how to install sctools #80

Open zhq90 opened 4 years ago

zhq90 commented 4 years ago

The README file of sctools did not provide any installation proceduce to install the tool. The python pypi sctools only have old 0.1.6 version of sctools. Would you show how to install the lastest version sctools in linux computer?

khajoue2 commented 2 years ago

We moved all of the python tools to C++. You can follow the Dockerfile instructions to manually install all required libraries in your linux machine and then compile the code in fastqprocessing directory and use the binary files. Here we have some examples of the programs we use to compute different metrics wrapped in wdl: https://github.com/broadinstitute/warp/blob/develop/tasks/skylab/Metrics.wdl