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HumanCellAtlas / secondary-analysis

Secondary Analysis Service of the Human Cell Atlas Data Coordination Platform
https://pipelines.data.humancellatlas.org/ui/
BSD 3-Clause "New" or "Revised" License
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[spike] Pick feature assignment tool #229

Closed kbergin closed 5 years ago

kbergin commented 6 years ago

Figure out tagging with gene name, location Choose a custom feature assignment method or DropSeqTools or maybe umitools? Check if dropseq tools is testing their code

AC: Analysis Choose a feature assignment tool

Notes from elastc ticket: Currently we use dropseqtools ( @ambrosejcarr @mbabadi is that still true?) and this may be fine. There's a possibility for discussion about which assignment tool we want to do. Need to pick aligner first. Not a space of contested scientific innovation.

┆Issue is synchronized with this Jira Bug

ambrosejcarr commented 6 years ago

Currently we use dropseqtools ( @ambrosejcarr @mbabadi is that still true?)

Yes.