Currently, ingest is inferring that the sequencing files that a pipeline analyzes are all of the fastq files in a bundle. While this assumption is true, it would be more reliable to call the ingest API’s add_input_file_reference endpoint for the sequencing JSON files when creating the submission envelope.
Note: This is not the same thing as “reference bundles”
Currently, ingest is inferring that the sequencing files that a pipeline analyzes are all of the fastq files in a bundle. While this assumption is true, it would be more reliable to call the ingest API’s
add_input_file_referenceendpoint for the sequencing JSON files when creating the submission envelope.Note: This is not the same thing as “reference bundles”
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