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HumanCellAtlas / secondary-analysis

Secondary Analysis Service of the Human Cell Atlas Data Coordination Platform
https://pipelines.data.humancellatlas.org/ui/
BSD 3-Clause "New" or "Revised" License
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Fix animal reference support for single-end SmartSeq2 pipeline #670

Open kbergin opened 5 years ago

kbergin commented 5 years ago

The single-end SmartSeq2 pipeline is currently expecting to get reference file information from the inputs.tsv file created in the GetInputs step. However, those fields are not included in the inputs file so this will cause failures when running the workflow.

Note: This is less urgent because the single-end pipeline is not in production.

┆Issue is synchronized with this Jira Story

kbergin commented 5 years ago

Hi there! We are about to pull in working on the SE/Fluidigm pipeline, and can let you know when we complete the validation and release it. Our aim for Q3 (ending Sept 30) is to validate this pipeline and release it, but it doesn’t need to get into prod right away if that’s not a priority in Q3 for Hornet. cc [~accountid:5b43ab1e441e440653b0a4d9]

I’ve linked our user story here.