Add the script for debugging inconsistent bundle lists.

HumanCellAtlas / secondary-analysis

Secondary Analysis Service of the Human Cell Atlas Data Coordination Platform

https://pipelines.data.humancellatlas.org/ui/

BSD 3-Clause "New" or "Revised" License

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Add the script for debugging inconsistent bundle lists. #835

Closed rexwangcc closed 5 years ago

rexwangcc commented 5 years ago

Purpose

https://broadinstitute.atlassian.net/jira/software/projects/GH/boards/530?selectedIssue=GH-563

Changes

Add the helper script.
Note: I intentionally re-used some code from the run_analysis package to avoid spending too much efforts on refactoring this time, but we shall re-visit later!

Review Instructions

Try it with some command like: python get_bundle_diff.py -d prod -p 4a95101c-9ffc-4f30-a809-f04518a23803 -c caas_prod_key_for_prod.json

samanehsan commented 5 years ago

I think this script could live in the run_analysis directory since it helps us identify which bundles we need to re-send to Lira for analysis. And then, you could import any functions that are already in utils.py like format_bundle and get_bundles

rexwangcc commented 5 years ago

Based on an offline discussion, moving the script under run_analysis will require updating the Cromwell-tools version the other script is using, and should not block this script from merging in. I will do that in a follow-up PR.