Input array of read1 and read2 instead of assuming a particular file naming scheme

HumanCellAtlas / skylab

Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines

BSD 3-Clause "New" or "Revised" License

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Input array of read1 and read2 instead of assuming a particular file naming scheme #327

Closed joshua-gould closed 4 years ago

joshua-gould commented 4 years ago

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nikellepetrillo commented 4 years ago

@joshua-gould we have implemented a similar change for this workflow in Terra. We are looking at how we want to address this issue for the long term. We will make these changes in the WARP repo https://github.com/broadinstitute/warp