search

HumanCellAtlas / skylab

Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines
BSD 3-Clause "New" or "Revised" License
47 stars 34 forks source link

increased the HDD to 3500 GB, from 500 GB originally, to speed-up the SplitBamByCellBarcode step #358

Open kishorikonwar opened 4 years ago

kishorikonwar commented 4 years ago

Purpose

Speed-up the SplitCellByCellBarcode step of Optimus by modifying the sctools to write the intermediate BAM files of SplitCellByBarcode in SAM format. The goal is to speed-up the step but at the expense of larger sized intermediate files in the step

Changes

a) Changed the HDD from 500GB to 3500GB b) Changed the docker image to a higher version of sctools