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HuntsmanCancerInstitute / RBSSeqTools

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Error: Invalid or corrupt jarfile #3

Open gurpreet-bioinfo opened 2 years ago

gurpreet-bioinfo commented 2 years ago

Hi @tmosbruger @tjparnell @DavidAustinNix,

I am trying to run jar files under /HuntsmanCancerInstitute/RBSSeqTools-master/Releases/BSSeqTools_1.0/rbsseq after unzipping SourceCode.zip and it shows the following error: Error: Invalid or corrupt jarfile

Do you have any manual/documentation available for RBSSeqTools?

Please advise. Thanks.

DavidAustinNix commented 2 years ago

Hello Gurpreet,

Try downloading the BSSeqTools_1.0.zip archive, unzip it on a linux/ mac, then launch one of the applications:

java -jar -Xmx2G BSSeqTools_1.0/Apps/CreateMethTable

or

java -jar -Xmx2G BSSeqTools_1.0/Apps/ScorePseudouridinePositions

without arguments to print the help menus. This works for me using Java 1.8.

-cheers, David

gurpreet-bioinfo commented 2 years ago

Thanks @DavidAustinNix , it's working !

DavidAustinNix commented 1 year ago

Hello Gurpreet,

Try downloading the BSSeqTools_1.0.zip archive, unzip it on a linux/ mac, then launch one of the applications:

java -jar -Xmx2G BSSeqTools_1.0/Apps/CreateMethTable

or

java -jar -Xmx2G BSSeqTools_1.0/Apps/ScorePseudouridinePositions

without arguments to print the help menus. This works for me using Java 1.8.

-cheers, David

David Austin Nix, PhD Director, HCI Bioinformatic Analysis Shared Resource (BASR) Huntsman Cancer Institute and the University of Utah 801-901-0649 @.*** https://uofuhealth.utah.edu/huntsman/shared-resources/gba/bioinformatics/

On Apr 22, 2022, at 2:42 PM, Gurpreet Kaur @.***> wrote:

Hi @tmosbruger https://github.com/tmosbruger @tjparnell https://github.com/tjparnell @DavidAustinNix https://github.com/DavidAustinNix,

I am trying to run jar files under /HuntsmanCancerInstitute/RBSSeqTools-master/Releases/BSSeqTools_1.0/rbsseq after unzipping SourceCode.zip and it shows the following error: Error: Invalid or corrupt jarfile

Do you have any manual/documentation available for RBSSeqTools?

Please advise. Thanks.

— Reply to this email directly, view it on GitHub https://github.com/HuntsmanCancerInstitute/RBSSeqTools/issues/3, or unsubscribe https://github.com/notifications/unsubscribe-auth/AC2V6DNOCYYQTYR2C4CQDCTVGMFJTANCNFSM5UDKUH5Q. You are receiving this because you were mentioned.