Huntsmanlab / utanos

Utilities for doing analysis on shallow WGS data
https://huntsmanlab.github.io/utanos/
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Add visualization options during cn-feature modelling #43

Closed genomaxx closed 11 months ago

genomaxx commented 1 year ago

Use feature density barplots and density scatterplots with marginal histograms to show feature distributions. These two options will serve as the pre-modelling visualization options.

Here is an example. Screen Shot 2023-09-26 at 4 44 50 PM

Implement shaded mixture model line plots post-modelling. These plots should be generated automatically when requested for a given signature. Here is an example: Screen Shot 2023-09-26 at 4 48 08 PM

Compose section in new-cn-signatures-vignette on use of these plotting options.

genomaxx commented 12 months ago

PR #47 doesn't include the marginal histogram plotting function. That will need to be a part of other commits and a subsequent PR.