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Huntsmanlab / utanos

Utilities for doing analysis on shallow WGS data
https://huntsmanlab.github.io/utanos/
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Address miscellaneous code warnings from devtools::check #68

Open genomaxx opened 2 months ago

genomaxx commented 2 months ago

Address miscellaneous code warnings from devtools::check

Examples:

  1. Missing parameter documentation for several functions.
  2. Some mixed use of ::: vs :: in function calls
  3. Many instances of "no visible global function definition for ‘%>%’ "
  4. Some improper/not great if conditions: Found if() conditions comparing class() to string: File ‘utanos/R/helpersignaturefunctions.R’: if (class(abs_profiles) == "QDNAseqCopyNumbers") ...