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HurlesGroupSanger / indelible

Structural Variation breakpoint discovery via adaptive learning
GNU General Public License v3.0
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Docker Image #9

Open ksarathbabu opened 2 years ago

ksarathbabu commented 2 years ago

Thanks for this exciting tool. Read the paper and was excited to test it out. I couldn't find a mercury/indelible:latest image. So found the mercury/indelible:hg19_feb0a6f tag.

While running it, docker run -ti mercury/indelible:hg19_feb0a6f I get the following error.

Traceback (most recent call last): File "./indelible.py", line 90, in config_path = args.config_path AttributeError: 'Namespace' object has no attribute 'config_path'

greekkey commented 2 years ago

I got the same problem. It was mentioned in the GitHub page that "Please see Docker's documentation for information on running InDelible via the Docker framework.", but I did not find any documentation in (https://hub.docker.com/r/mercury/indelible).

eugenegardner commented 2 years ago

Hello Both,

Sorry for the long delay, we realised that the Docker implementation needed several fixes. Please try using our new documentation and image and let me know how it works. This all comes packaged alongside our latest release:

https://github.com/HurlesGroupSanger/indelible/releases/tag/v1.1.3