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Hy4m / linkET

Everything is Linkable
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Data volume #23

Closed jiaxinwang123456 closed 5 months ago

jiaxinwang123456 commented 5 months ago

Hello, I would like to inquire if the linkET package can run a data volume of over 20000 lines?

Hy4m commented 5 months ago

compute correlation using correlate() function?

jiaxinwang123456 commented 5 months ago

I want to use R to calculate the mantel_test test, and there are 20000 rows of data. After importing R language, there were no errors but no graphs were generated, so I want to ask if mantel_test can't calculate so much data?

Hy4m commented 5 months ago

I want to use R to calculate the mantel_test test, and there are 20000 rows of data. After importing R language, there were no errors but no graphs were generated, so I want to ask if mantel_test can't calculate so much data?

Firstly, you should comfirm that all variables (OTUs) are on columns. And then, you can set mantel_fun argument to "mantel.randtest", this means using ade4 package to compute mantel test.

jiaxinwang123456 commented 5 months ago

I got it, thank you!