Open geoffwoollard opened 1 month ago
# packages in environment at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
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absl-py 2.1.0 pypi_0 pypi
astunparse 1.6.3 pypi_0 pypi
attr 2.5.1 h166bdaf_1 conda-forge
autoconf 2.71 pl5321h2b4cb7a_1 conda-forge
bibtexparser 1.2.0 pypi_0 pypi
binutils 2.43 h4852527_1 conda-forge
binutils_impl_linux-64 2.43 h4bf12b8_1 conda-forge
binutils_linux-64 2.43 h4852527_1 conda-forge
biopython 1.76 pypi_0 pypi
bzip2 1.0.8 h4bc722e_7 conda-forge
c-ares 1.33.1 heb4867d_0 conda-forge
c-compiler 1.7.0 hd590300_1 conda-forge
ca-certificates 2024.8.30 hbcca054_0 conda-forge
cachetools 5.5.0 pypi_0 pypi
certifi 2024.8.30 pypi_0 pypi
charset-normalizer 3.3.2 pypi_0 pypi
clang 19.1.0 default_h9e3a008_0 conda-forge
clang-19 19.1.0 default_hb5137d0_0 conda-forge
cloudpickle 3.0.0 pypi_0 pypi
cmake 3.30.3 hf9cb763_0 conda-forge
contourpy 1.3.0 pypi_0 pypi
cuda 12.2.0 0 nvidia/label/cuda-12.2.0
cuda-cccl 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-command-line-tools 12.2.0 0 nvidia/label/cuda-12.2.0
cuda-compiler 12.2.0 0 nvidia/label/cuda-12.2.0
cuda-cudart 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-cudart-dev 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-cudart-static 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-cuobjdump 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-cupti 12.2.60 0 nvidia/label/cuda-12.2.0
cuda-cupti-static 12.2.60 0 nvidia/label/cuda-12.2.0
cuda-cuxxfilt 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-demo-suite 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-documentation 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-driver-dev 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-gdb 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-libraries 12.2.0 0 nvidia/label/cuda-12.2.0
cuda-libraries-dev 12.2.0 0 nvidia/label/cuda-12.2.0
cuda-libraries-static 12.2.0 0 nvidia/label/cuda-12.2.0
cuda-nsight 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-nsight-compute 12.2.0 0 nvidia/label/cuda-12.2.0
cuda-nvcc 12.2.91 0 nvidia/label/cuda-12.2.0
cuda-nvdisasm 12.2.53 0 nvidia/label/cuda-12.2.0
cuda-nvml-dev 12.2.81 0 nvidia/label/cuda-12.2.0
cuda-nvprof 12.2.60 0 nvidia/label/cuda-12.2.0
cuda-nvprune 12.2.53 0 nvidia/label/cuda-12.2.0
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cuda-nvtx 12.2.53 0 nvidia/label/cuda-12.2.0
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cuda-toolkit 12.2.0 0 nvidia/label/cuda-12.2.0
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gcc 12.4.0 h236703b_1 conda-forge
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libcublas-static 12.2.1.16 0 nvidia/label/cuda-12.2.0
libcufft 11.0.8.15 0 nvidia/label/cuda-12.2.0
libcufft-dev 11.0.8.15 0 nvidia/label/cuda-12.2.0
libcufft-static 11.0.8.15 0 nvidia/label/cuda-12.2.0
libcufile 1.7.0.149 0 nvidia/label/cuda-12.2.0
libcufile-dev 1.7.0.149 0 nvidia/label/cuda-12.2.0
libcufile-static 1.7.0.149 0 nvidia/label/cuda-12.2.0
libcurand 10.3.3.53 0 nvidia/label/cuda-12.2.0
libcurand-dev 10.3.3.53 0 nvidia/label/cuda-12.2.0
libcurand-static 10.3.3.53 0 nvidia/label/cuda-12.2.0
libcurl 8.10.1 hbbe4b11_0 conda-forge
libcusolver 11.5.0.53 0 nvidia/label/cuda-12.2.0
libcusolver-dev 11.5.0.53 0 nvidia/label/cuda-12.2.0
libcusolver-static 11.5.0.53 0 nvidia/label/cuda-12.2.0
libcusparse 12.1.1.53 0 nvidia/label/cuda-12.2.0
libcusparse-dev 12.1.1.53 0 nvidia/label/cuda-12.2.0
libcusparse-static 12.1.1.53 0 nvidia/label/cuda-12.2.0
libcxx 17.0.6 he02047a_6 conda-forge
libcxxabi 17.0.6 h4bc722e_6 conda-forge
libdrm 2.4.123 hb9d3cd8_0 conda-forge
libdrm-cos6-x86_64 2.4.65 4 anaconda
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 hd590300_2 conda-forge
libexpat 2.6.3 h5888daf_0 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libflac 1.4.3 h59595ed_0 conda-forge
libgcc 14.1.0 h77fa898_1 conda-forge
libgcc-devel_linux-64 12.4.0 ha4f9413_101 conda-forge
libgcc-ng 14.1.0 h69a702a_1 conda-forge
libgcrypt 1.11.0 h4ab18f5_1 conda-forge
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libglu 9.0.0 ha6d2627_1004 conda-forge
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libhwloc 2.11.1 default_hecaa2ac_1000 conda-forge
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libnpp 12.1.1.14 0 nvidia/label/cuda-12.2.0
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libnsl 2.0.1 hd590300_0 conda-forge
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libnvjpeg 12.1.1.14 0 nvidia/label/cuda-12.2.0
libnvjpeg-dev 12.1.1.14 0 nvidia/label/cuda-12.2.0
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libogg 1.3.5 h4ab18f5_0 conda-forge
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libstdcxx-ng 14.1.0 h4852527_1 conda-forge
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libtasn1 4.19.0 h166bdaf_0 conda-forge
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libudev1 256.6 hb9d3cd8_0 conda-forge
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libuv 1.49.0 hb9d3cd8_0 conda-forge
libvorbis 1.3.7 h9c3ff4c_0 conda-forge
libx11-common-cos6-x86_64 1.6.4 4 anaconda
libx11-cos6-x86_64 1.6.4 4 anaconda
libxcb 1.17.0 h8a09558_0 conda-forge
libxcrypt 4.4.36 hd590300_1 conda-forge
libxml2 2.12.7 he7c6b58_4 conda-forge
libzlib 1.3.1 h4ab18f5_1 conda-forge
lz4-c 1.9.4 hcb278e6_0 conda-forge
lzo 2.10 hd590300_1001 conda-forge
m4 1.4.18 h516909a_1001 conda-forge
make 4.4.1 hb9d3cd8_1 conda-forge
markdown 3.7 pypi_0 pypi
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matplotlib 3.8.2 pypi_0 pypi
mesa-dri-drivers-cos6-x86_64 11.0.7 4 anaconda
mesa-dri1-drivers-cos6-x86_64 7.11 4 anaconda
mesa-libgl-cos6-x86_64 11.0.7 4 anaconda
mesa-libgl-devel-cos6-x86_64 11.0.7 4 anaconda
mesalib 24.2.3 h4e3793c_0 conda-forge
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networkx 3.2.1 pypi_0 pypi
ninja 1.12.1 h297d8ca_0 conda-forge
nsight-compute 2023.2.0.16 0 nvidia/label/cuda-12.2.0
numpy 1.23.5 pypi_0 pypi
nvidia-cublas-cu12 12.2.5.6 pypi_0 pypi
nvidia-cuda-cupti-cu12 12.2.142 pypi_0 pypi
nvidia-cuda-nvcc-cu12 12.2.140 pypi_0 pypi
nvidia-cuda-nvrtc-cu12 12.2.140 pypi_0 pypi
nvidia-cuda-runtime-cu12 12.2.140 pypi_0 pypi
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nvidia-curand-cu12 10.3.3.141 pypi_0 pypi
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nvidia-cusparse-cu12 12.1.2.141 pypi_0 pypi
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pip 24.2 pyh8b19718_1 conda-forge
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python 3.9.20 h13acc7a_0_cpython conda-forge
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python_abi 3.9 5_cp39 conda-forge
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tensorboard 2.15.2 pypi_0 pypi
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tensorflow-io-gcs-filesystem 0.37.1 pypi_0 pypi
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tifffile 2021.3.5 pypi_0 pypi
tk 8.6.13 noxft_h4845f30_101 conda-forge
tkcolorpicker 2.1.3 pypi_0 pypi
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xorg-damageproto 1.2.1 hb9d3cd8_1003 conda-forge
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xorg-glproto 1.4.17 hb9d3cd8_1003 conda-forge
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xorg-randrproto 1.5.0 hb9d3cd8_1002 conda-forge
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xorg-xf86vidmodeproto 2.3.1 hb9d3cd8_1003 conda-forge
xorg-xproto 7.0.31 hb9d3cd8_1008 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
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And an install log (ran out of time on the cluster)
[ 52%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Obj/ObjFileParser.cpp.o
[ 52%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Ogre/OgreImporter.cpp.o
[ 53%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Ogre/OgreStructs.cpp.o
[ 53%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Ogre/OgreBinarySerializer.cpp.o
[ 53%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Ogre/OgreXmlSerializer.cpp.o
[ 54%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Ogre/OgreMaterial.cpp.o
[ 54%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/OpenGEX/OpenGEXImporter.cpp.o
[ 55%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Ply/PlyLoader.cpp.o
[ 55%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Ply/PlyParser.cpp.o
[ 55%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/MS3D/MS3DLoader.cpp.o
[ 56%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/COB/COBLoader.cpp.o
[ 56%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Blender/BlenderLoader.cpp.o
[ 57%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Blender/BlenderDNA.cpp.o
[ 57%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Blender/BlenderScene.cpp.o
[100%] Linking CXX static library ../libembree4.a
[100%] Built target embree
[ 58%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Blender/BlenderModifier.cpp.o
[ 38%] Performing install step for 'ext_embree'
[ 5%] Built target sys
[ 6%] Built target math
[ 7%] Built target simd
[ 58%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Blender/BlenderBMesh.cpp.o
[ 9%] Built target lexers
[ 58%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Blender/BlenderTessellator.cpp.o
[ 59%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/Blender/BlenderCustomData.cpp.o
[ 10%] Built target tasking
[ 59%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/IFC/IFCLoader.cpp.o
[ 60%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/IFC/IFCReaderGen1_2x3.cpp.o
[ 42%] Built target embree_avx2
[ 60%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/IFC/IFCReaderGen2_2x3.cpp.o
[ 58%] Built target embree_avx2_check_globals
[ 77%] Built target embree_avx
[ 60%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/IFC/IFCUtil.cpp.o
[ 61%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/IFC/IFCGeometry.cpp.o
[ 61%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/IFC/IFCMaterial.cpp.o
[ 77%] Built target embree_avx_check_globals
[ 62%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/IFC/IFCProfile.cpp.o
[ 62%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/IFC/IFCCurve.cpp.o
[100%] Built target embree
Install the project...
[ 62%] Building CXX object code/CMakeFiles/assimp.dir/AssetLib/IFC/IFCBoolean.cpp.o
-- Install configuration: "Release"
-- Installing: /mnt/home/gwoollard/ceph/repos/Open3D/build/embree/include/embree4
-- Installing: /mnt/home/gwoollard/ceph/repos/Open3D/build/embree/include/embree4/rtcore_geometry.h
-- Installing: /mnt/home/gwoollard/ceph/repos/Open3D/build/embree/include/embree4/rtcore_device.h
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-- Installing: /mnt/home/gwoollard/ceph/repos/Open3D/build/assimp/include/assimp/Compiler/poppack1.h
-- Installing: /mnt/home/gwoollard/ceph/repos/Open3D/build/assimp/include/assimp/Compiler/pstdint.h
-- Installing: /mnt/home/gwoollard/ceph/repos/Open3D/build/assimp/lib64/pkgconfig/assimp.pc
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[ 57%] Building CXX object cpp/open3d/visualization/gui/CMakeFiles/GUI.dir/Application.cpp.o
[ 57%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/shader/ImageShader.cpp.o
[ 57%] Building CUDA object cpp/open3d/t/geometry/kernel/CMakeFiles/tgeometry_kernel.dir/TriangleMeshCUDA.cu.o
[ 58%] Building CUDA object cpp/open3d/t/geometry/kernel/CMakeFiles/tgeometry_kernel.dir/TransformCUDA.cu.o
[ 58%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/hashmap/CPU/CPUHashBackendBuffer.cpp.o
[ 58%] Built target pipelines
[ 58%] Building CUDA object cpp/open3d/t/geometry/kernel/CMakeFiles/tgeometry_kernel.dir/VoxelBlockGridCUDA.cu.o
[ 58%] Building CUDA object cpp/open3d/t/pipelines/kernel/CMakeFiles/tpipelines_kernel.dir/RegistrationCUDA.cu.o
[ 58%] Building CXX object cpp/open3d/geometry/CMakeFiles/geometry.dir/PointCloudPlanarPatchDetection.cpp.o
[ 58%] Building CUDA object cpp/open3d/t/pipelines/kernel/CMakeFiles/tpipelines_kernel.dir/FillInLinearSystemCUDA.cu.o
[ 58%] Building CXX object cpp/open3d/io/CMakeFiles/io.dir/file_format/FileOBJ.cpp.o
[ 58%] Building CXX object cpp/open3d/data/CMakeFiles/data.dir/dataset/JuneauImage.cpp.o
[ 58%] Building CXX object cpp/open3d/utility/CMakeFiles/utility.dir/Helper.cpp.o
[ 58%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/shader/NormalShader.cpp.o
[ 59%] Building CXX object cpp/open3d/visualization/gui/CMakeFiles/GUI.dir/BitmapWindowSystem.cpp.o
[ 59%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/hashmap/CPU/CreateCPUHashBackend.cpp.o
[ 59%] Building CXX object cpp/open3d/data/CMakeFiles/data.dir/dataset/KnotMesh.cpp.o
[ 59%] Building CXX object cpp/open3d/geometry/CMakeFiles/geometry.dir/Qhull.cpp.o
In file included from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_tree.h:63,
from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/map:60,
from /mnt/home/gwoollard/ceph/repos/Open3D/build/tinyobjloader/src/ext_tinyobjloader/tiny_obj_loader.h:62,
from /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp:8:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:501:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:528:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:535:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:626:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = const long unsigned int*; _ForwardIterator = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = const long unsigned int*; _ForwardIterator = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = const long unsigned int*; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_uninitialized.h:372:37,
inlined from 'void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const long unsigned int*; _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/vector.tcc:339:35,
inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(std::initializer_list<_Tp>) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:787:21,
inlined from 'bool open3d::io::WriteTriangleMeshToOBJ(const std::string&, const open3d::geometry::TriangleMesh&, bool, bool, bool, bool, bool, bool)' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp:285:47:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:434:30: error: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' forming offset 8 is out of the bounds [0, 8] of object '<anonymous>' with type 'const long unsigned int [1]' [-Werror=array-bounds]
434 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp: In function 'bool open3d::io::WriteTriangleMeshToOBJ(const std::string&, const open3d::geometry::TriangleMesh&, bool, bool, bool, bool, bool, bool)':
/mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp:285:47: note: '<anonymous>' declared here
285 | material_id_faces_map[mi] = {i};
| ^
cc1plus: all warnings being treated as errors
make[3]: *** [cpp/open3d/io/CMakeFiles/io.dir/build.make:342: cpp/open3d/io/CMakeFiles/io.dir/file_format/FileOBJ.cpp.o] Error 1
make[2]: *** [CMakeFiles/Makefile2:2546: cpp/open3d/io/CMakeFiles/io.dir/all] Error 2
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In file included from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/x86_64-conda-linux-gnu/bits/c++allocator.h:33,
from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/allocator.h:46,
from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/vector:61,
from /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannIndex.h:10,
from /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannIndex.cpp:8:
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = float]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775804] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = float]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const float*; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const float*; <template-parameter-2-2> = void; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = float]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, long int, open3d::core::nns::NeighborSearchAllocator<float, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775804] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = float]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const float*; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const float*; <template-parameter-2-2> = void; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, long int, open3d::core::nns::NeighborSearchAllocator<float, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = double]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775800] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = double]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const double*; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = double]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, long int, open3d::core::nns::NeighborSearchAllocator<double, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775800] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = double]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const double*; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, long int, open3d::core::nns::NeighborSearchAllocator<double, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
cc1plus: all warnings being treated as errors
make[3]: *** [cpp/open3d/core/CMakeFiles/core.dir/build.make:1116: cpp/open3d/core/CMakeFiles/core.dir/nns/NanoFlannIndex.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
[ 78%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/rendering/filament/FilamentView.cpp.o
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[ 78%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/rendering/filament/PointCloudBuffers.cpp.o
And this most recent make install
(flexutils-tensorflow) (base) [gwoollard@workergpu004 build]$ make install-pip-package -j35
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-- Fetching latest from the remote origin
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HEAD is now at 473592d Add SECURITY.md, restrict github actions permissions
[ 38%] Built target camera
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[ 41%] Building CXX object cpp/open3d/io/CMakeFiles/io.dir/file_format/FileOFF.cpp.o
[ 41%] Building CXX object cpp/open3d/io/CMakeFiles/io.dir/file_format/FilePCD.cpp.o
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[ 45%] Building CXX object cpp/open3d/io/CMakeFiles/io.dir/rpc/BufferConnection.cpp.o
[ 45%] Building CXX object cpp/open3d/io/CMakeFiles/io.dir/rpc/Connection.cpp.o
[ 45%] Building CXX object cpp/open3d/io/CMakeFiles/io.dir/rpc/DummyReceiver.cpp.o
[ 45%] Building CXX object cpp/open3d/io/CMakeFiles/io.dir/rpc/MessageProcessorBase.cpp.o
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[ 45%] Building CXX object cpp/open3d/io/CMakeFiles/io.dir/rpc/RemoteFunctions.cpp.o
[ 45%] Building CXX object cpp/open3d/io/CMakeFiles/io.dir/rpc/ZMQContext.cpp.o
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[ 48%] Built target data
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[ 53%] Built target tgeometry
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[ 53%] No build step for 'open3d_ml'
[ 58%] Built target GUI
[ 58%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/nns/NanoFlannIndex.cpp.o
[ 58%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/hashmap/CUDA/CreateCUDAHashBackend.cu.o
[ 58%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/kernel/ArangeCUDA.cu.o
[ 58%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/hashmap/CUDA/CUDAHashBackendBuffer.cu.o
[ 58%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/hashmap/CUDA/SlabNodeManager.cu.o
[ 59%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/kernel/IndexGetSetCUDA.cu.o
[ 59%] No install step for 'open3d_ml'
[ 60%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/kernel/NonZeroCUDA.cu.o
[ 60%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/kernel/IndexReductionCUDA.cu.o
[ 61%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/kernel/BinaryEWCUDA.cu.o
[ 61%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/kernel/ReductionCUDA.cu.o
[ 61%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/kernel/UnaryEWCUDA.cu.o
[ 61%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/linalg/AddMMCUDA.cpp.o
[ 62%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/linalg/InverseCUDA.cpp.o
[ 62%] Built target geometry
[ 62%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/rendering/filament/FilamentView.cpp.o
[ 62%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/rendering/filament/LineSetBuffers.cpp.o
[ 63%] Completed 'open3d_ml'
[ 63%] Built target open3d_ml
[ 63%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/rendering/filament/PointCloudBuffers.cpp.o
[ 63%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/rendering/filament/TriangleMeshBuffers.cpp.o
[ 63%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/utility/Draw.cpp.o
[ 63%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/visualizer/MessageProcessor.cpp.o
[ 63%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/visualizer/GuiSettingsModel.cpp.o
[ 64%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/visualizer/GuiSettingsView.cpp.o
[ 64%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/visualizer/GuiVisualizer.cpp.o
[ 64%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/visualizer/GuiWidgets.cpp.o
[ 64%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/visualizer/O3DVisualizer.cpp.o
[ 64%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/linalg/LeastSquaresCUDA.cpp.o
[ 64%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/linalg/LinalgUtils.cpp.o
[ 64%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/linalg/LUCUDA.cpp.o
[ 65%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/linalg/MatmulCUDA.cpp.o
[ 65%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/linalg/SolveCUDA.cpp.o
[ 65%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/linalg/SVDCUDA.cpp.o
In file included from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_tree.h:63,
from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/map:60,
from /mnt/home/gwoollard/ceph/repos/Open3D/build/tinyobjloader/src/ext_tinyobjloader/tiny_obj_loader.h:62,
from /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp:8:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:501:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:528:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:535:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:626:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = const long unsigned int*; _ForwardIterator = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = const long unsigned int*; _ForwardIterator = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = const long unsigned int*; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_uninitialized.h:372:37,
inlined from 'void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const long unsigned int*; _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/vector.tcc:339:35,
inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(std::initializer_list<_Tp>) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:787:21,
inlined from 'bool open3d::io::WriteTriangleMeshToOBJ(const std::string&, const open3d::geometry::TriangleMesh&, bool, bool, bool, bool, bool, bool)' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp:285:47:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:434:30: error: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' forming offset 8 is out of the bounds [0, 8] of object '<anonymous>' with type 'const long unsigned int [1]' [-Werror=array-bounds]
434 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp: In function 'bool open3d::io::WriteTriangleMeshToOBJ(const std::string&, const open3d::geometry::TriangleMesh&, bool, bool, bool, bool, bool, bool)':
/mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp:285:47: note: '<anonymous>' declared here
285 | material_id_faces_map[mi] = {i};
| ^
cc1plus: all warnings being treated as errors
make[3]: *** [cpp/open3d/io/CMakeFiles/io.dir/build.make:342: cpp/open3d/io/CMakeFiles/io.dir/file_format/FileOBJ.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
[ 65%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/linalg/TriCUDA.cu.o
[ 65%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/nns/FixedRadiusSearchOps.cu.o
[ 65%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/nns/kernel/BlockSelectFloat32.cu.o
[ 65%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/nns/kernel/BlockSelectFloat64.cu.o
In file included from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/x86_64-conda-linux-gnu/bits/c++allocator.h:33,
from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/allocator.h:46,
from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/vector:61,
from /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannIndex.h:10,
from /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannIndex.cpp:8:
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = float]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775804] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = float]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const float*; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const float*; <template-parameter-2-2> = void; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = float]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, long int, open3d::core::nns::NeighborSearchAllocator<float, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775804] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = float]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const float*; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const float*; <template-parameter-2-2> = void; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, long int, open3d::core::nns::NeighborSearchAllocator<float, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = double]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775800] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = double]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const double*; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = double]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, long int, open3d::core::nns::NeighborSearchAllocator<double, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775800] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = double]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const double*; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, long int, open3d::core::nns::NeighborSearchAllocator<double, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
cc1plus: all warnings being treated as errors
make[3]: *** [cpp/open3d/core/CMakeFiles/core.dir/build.make:1116: cpp/open3d/core/CMakeFiles/core.dir/nns/NanoFlannIndex.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
[ 65%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/visualizer/O3DVisualizerSelections.cpp.o
[ 65%] Building CXX object cpp/open3d/visualization/CMakeFiles/visualization.dir/app/Viewer.cpp.o
make[2]: *** [CMakeFiles/Makefile2:2546: cpp/open3d/io/CMakeFiles/io.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
[ 71%] Built target visualization
make[2]: *** [CMakeFiles/Makefile2:2366: cpp/open3d/core/CMakeFiles/core.dir/all] Error 2
make[1]: *** [CMakeFiles/Makefile2:4090: cpp/pybind/CMakeFiles/install-pip-package.dir/rule] Error 2
make: *** [Makefile:1229: install-pip-package] Error 2
(flexutils-tensorflow) (base) [gwoollard@workergpu004 build]$
Tried running the install script from the top and it failed...
(flexutils-tensorflow) (base) [gwoollard@workergpu004 Flexutils-Toolkit]$ bash ./install_open3d.sh
Package 'xorg-dev' is not installed.
Package 'libxcb-shm0' is not installed.
Package 'libglu1-mesa-dev' is not installed.
Package 'python3-dev' is not installed.
Package 'clang' is not installed.
Package 'libc++-dev' is not installed.
Package 'libc++abi-dev' is not installed.
Package 'libsdl2-dev' is not installed.
Package 'ninja-build' is not installed.
Package 'libxi-dev' is not installed.
Package 'libtbb-dev' is not installed.
Package 'libosmesa6-dev' is not installed.
Package 'libudev-dev' is not installed.
Package 'autoconf' is not installed.
Package 'libtool' is not installed.
##### Cloning Open3D... #####
./install_open3d.sh: line 124: CURRENT_DIR: command not found
fatal: destination path 'Open3D' already exists and is not an empty directory.
##### Done! #####
##### Creating build folders... #####
mkdir: cannot create directory ‘build’: File exists
##### Done! #####
##### Create installation folder... #####
mkdir: cannot create directory ‘../open3d_install’: File exists
##### Done! #####
##### Cloning Open3D-ML... #####
fatal: destination path 'Open3D-ML' already exists and is not an empty directory.
##### Done! #####
##### Checking Nvidia Drivers version... #####
Nvidia Drivers OK
##### Done! #####
##### Getting Flexutils-Tensorflow python... #####
##### Done! #####
##### Generating building files... #####
-- CMAKE_BUILD_TYPE is set to Release.
-- ccache found at /usr/local/bin/ccache
-- Downloading third-party dependencies to /mnt/home/gwoollard/ceph/repos/Open3D/3rdparty_downloads
CMake Deprecation Warning at CMakeLists.txt:190 (cmake_policy):
The OLD behavior for policy CMP0072 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- Open3D 0.18.0+f4e1fa94f
-- Building with native CUDA architecture.
-- Fetching ISPC compiler
-- Building with detected instruction sets
-- Using ISPC instruction sets: avx512skx-i32x16
-- Using security hardening compiler flags: $<$<COMPILE_LANGUAGE:CUDA>:-Xcompiler=-fstack-protector-strong,-Wformat,-Wformat-security>;$<$<COMPILE_LANGUAGE:CXX>:-fstack-protector-strong;-Wformat;-Wformat-security>
-- Using security hardening linker flags: $<$<COMPILE_LANGUAGE:CUDA>:-Xcompiler=-Wl,-z,noexecstack,-Wl,-z,relro,-z,now,$<$<STREQUAL:$<TARGET_PROPERTY:TYPE>,EXECUTABLE>:-pie>,$<$<CONFIG:Release>:LINKER:--strip-debug>>;$<$<COMPILE_LANGUAGE:CXX>:-Wl,-z,noexecstack;-Wl,-z,relro,-z,now;$<$<STREQUAL:$<TARGET_PROPERTY:TYPE>,EXECUTABLE>:-pie>;$<$<CONFIG:Release>:LINKER:--strip-debug>>
-- Using security hardening compiler definitions: _FORTIFY_SOURCE=2
-- Using installed third-party library 3rdparty_threads
-- Using installed third-party library 3rdparty_openmp
-- Building with OpenMP
-- Using installed third-party library 3rdparty_x11
-- Building library 3rdparty_glfw from source
CMake Deprecation Warning at 3rdparty/glfw/CMakeLists.txt:3 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Could NOT find Vulkan (missing: VULKAN_LIBRARY VULKAN_INCLUDE_DIR)
-- Using X11 for window creation
-- Building third-party library JPEG from source
-- NASM assembler enabled
-- libturbojpeg: WITH_CRT_DLL=OFF
CMake Warning (dev) at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/share/cmake-3.30/Modules/FetchContent.cmake:1953 (message):
Calling FetchContent_Populate(ext_qhull) is deprecated, call
FetchContent_MakeAvailable(ext_qhull) instead. Policy CMP0169 can be set
to OLD to allow FetchContent_Populate(ext_qhull) to be called directly for
now, but the ability to call it with declared details will be removed
completely in a future version.
Call Stack (most recent call first):
3rdparty/qhull/qhull.cmake:13 (FetchContent_Populate)
3rdparty/find_dependencies.cmake:1023 (include)
CMakeLists.txt:520 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- pybind11 v2.13.1
-- Using prebuilt third-party library Filament
-- GLIBC version 2.28 found: Using Google Filament binary.
-- Filament is located at /mnt/home/gwoollard/ceph/repos/Open3D/build/filament/src/ext_filament
-- Searching /usr/lib/llvm-[7..19]/lib/ for libc++ and libc++abi
-- CLANG_LIBDIR found in ubuntu-default: /usr/lib/llvm-7/lib
-- Using CLANG_LIBDIR: /usr/lib/llvm-7/lib
-- Filament C++ libraries: /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/libc++.so /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/libc++abi.so
-- Using installed third-party library 3rdparty_opengl
-- Using MKL to support BLAS and LAPACK functionalities.
-- IPO enabled
-- The tbbbind_2_5 target will be configured using the HWLOC 2.11.1
-- Using installed third-party library 3rdparty_cuda_npp 12.2.91
-- Using Intel IPP 2021.11.0.
-- open3d_sycl_target_sources(core): PRIVATE
-- Building TensorFlow ops
-- Building TensorFlow ops with CUDA
-- Getting TensorFlow properties ...
2024-09-26 10:18:28.174769: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2024-09-26 10:18:28.625712: E external/local_xla/xla/stream_executor/cuda/cuda_dnn.cc:9261] Unable to register cuDNN factory: Attempting to register factory for plugin cuDNN when one has already been registered
2024-09-26 10:18:28.625754: E external/local_xla/xla/stream_executor/cuda/cuda_fft.cc:607] Unable to register cuFFT factory: Attempting to register factory for plugin cuFFT when one has already been registered
2024-09-26 10:18:28.660570: E external/local_xla/xla/stream_executor/cuda/cuda_blas.cc:1515] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered
2024-09-26 10:18:28.742320: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
2024-09-26 10:18:33.318778: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT
-- TensorFlow version: 2.15.1
-- include dir: /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/python3.9/site-packages/tensorflow/include
-- library dir: /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/python3.9/site-packages/tensorflow
-- framework lib: /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/python3.9/site-packages/tensorflow/libtensorflow_framework.so.2
-- definitions: _GLIBCXX_USE_CXX11_ABI=1;EIGEN_MAX_ALIGN_BYTES=64
-- use cxx11 abi: 1
-- TensorFlow matches Open3D ABI: 1 == ON
-- Copying /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/visualization/webrtc_server/html to /mnt/home/gwoollard/ceph/repos/Open3D/build/bin/resources.
-- PYPI_PACKAGE_NAME: open3d
-- Getting TensorFlow properties ...
2024-09-26 10:18:44.053358: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2024-09-26 10:18:44.090950: E external/local_xla/xla/stream_executor/cuda/cuda_dnn.cc:9261] Unable to register cuDNN factory: Attempting to register factory for plugin cuDNN when one has already been registered
2024-09-26 10:18:44.090974: E external/local_xla/xla/stream_executor/cuda/cuda_fft.cc:607] Unable to register cuFFT factory: Attempting to register factory for plugin cuFFT when one has already been registered
2024-09-26 10:18:44.092155: E external/local_xla/xla/stream_executor/cuda/cuda_blas.cc:1515] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered
2024-09-26 10:18:44.098728: I tensorflow/core/platform/cpu_feature_guard.cc:182] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
2024-09-26 10:18:44.982739: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT
-- TensorFlow version: 2.15.1
-- include dir: /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/python3.9/site-packages/tensorflow/include
-- library dir: /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/python3.9/site-packages/tensorflow
-- framework lib: /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/python3.9/site-packages/tensorflow/libtensorflow_framework.so.2
-- definitions: _GLIBCXX_USE_CXX11_ABI=1;EIGEN_MAX_ALIGN_BYTES=64
-- use cxx11 abi: 1
-- TensorFlow matches Open3D ABI: 1 == ON
-- ================================================================================
-- Open3D 0.18.0 Configuration Summary
-- ================================================================================
-- Enabled Features:
-- OpenMP .................................. ON
-- Headless Rendering ...................... OFF
-- Azure Kinect Support .................... OFF
-- Intel RealSense Support ................. OFF
-- CUDA Support ............................ ON
-- CUDA cached memory manager .............. ON
-- SYCL Support ............................ OFF
-- ISPC Support ............................ ON
-- Build GUI ............................... ON
-- Build WebRTC visualizer ................. ON
-- Build Shared Library .................... OFF
-- Build Unit Tests ........................ OFF
-- Build Examples .......................... OFF
-- Build Python Module ..................... ON
-- Build Jupyter Extension ................. OFF
-- Build TensorFlow Ops .................... ON
-- Build PyTorch Ops ....................... OFF
-- Build Benchmarks ........................ OFF
-- Bundle Open3D-ML ........................ ON
-- Force GLIBCXX_USE_CXX11_ABI= ............ 1
-- ================================================================================
-- Third-Party Dependencies:
-- Assimp .................................. yes (build from source)
-- BLAS .................................... yes
-- curl .................................... yes (build from source)
-- Eigen3 .................................. yes (build from source)
-- filament ................................ yes (build from source)
-- fmt ..................................... yes (build from source)
-- GLEW .................................... yes (build from source)
-- GLFW .................................... yes (build from source)
-- googletest .............................. no
-- imgui ................................... yes (build from source)
-- ipp ..................................... yes (build from source)
-- JPEG .................................... yes (build from source)
-- jsoncpp ................................. yes (build from source)
-- liblzf .................................. yes (build from source)
-- msgpack ................................. yes (build from source)
-- nanoflann ............................... yes (build from source)
-- OpenGL .................................. yes
-- PNG ..................................... yes (build from source)
-- qhullcpp ................................ yes (build from source)
-- librealsense ............................ no
-- TBB ..................................... no
-- tinyfiledialogs ......................... yes (build from source)
-- TinyGLTF ................................ yes (build from source)
-- tinyobjloader ........................... yes (build from source)
-- VTK ..................................... yes (build from source)
-- WebRTC .................................. yes (build from source)
-- ZeroMQ .................................. yes (build from source)
-- ================================================================================
-- Configuring done (41.5s)
-- Generating done (27.8s)
-- Build files have been written to: /mnt/home/gwoollard/ceph/repos/Open3D/build
##### Done! #####
##### Installing Open3D in Flexutils-Tensorflow environment...... #####
[ 0%] Performing update step for 'open3d_ml'
[ 1%] Built target ext_eigen
[ 1%] Built target ext_turbojpeg
[ 4%] Built target ext_boringssl
[ 4%] Built target ext_assimp
[ 4%] Built target ext_nanoflann
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[ 7%] Built target ext_jsoncpp
[ 8%] Built target ext_zlib
[ 9%] Built target ext_tinygltf
[ 9%] Built target 3rdparty_glew
[ 10%] Built target ext_tinyobjloader
[ 10%] Built target 3rdparty_rply
[ 10%] Built target 3rdparty_tinyfiledialogs
[ 10%] Built target ext_fmt
[ 12%] Built target ext_poisson
[ 13%] Built target ext_filament
[ 13%] Built target ext_zeromq
[ 13%] Built target ext_cppzmq
-- Fetching latest from the remote origin
[ 13%] Built target ext_directxmath
[ 16%] Built target ext_vtk
[ 16%] Built target ext_directxheaders
[ 16%] Built target ext_msgpack-c
[ 16%] Built target ext_mkl
[ 16%] Built target ext_stdgpu
[ 16%] Performing update step for 'ext_ipp'
[ 16%] Built target copy_html_dir
[ 17%] Built target ext_civetweb
[ 18%] Built target ext_embree
[ 19%] Built target ext_webrtc
[ 20%] Built target ext_curl
[ 21%] Built target ShaderLinker
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[ 25%] Built target materials
[ 25%] Built target ShaderEncoder
[ 26%] Built target ext_uvatlas
[ 26%] Built target 3rdparty_imgui
[ 26%] Built target ext_webrtc_all
[ 26%] No patch step for 'ext_ipp'
[ 27%] Built target 3rdparty_qhull_r
[ 29%] Built target shader
[ 29%] No configure step for 'ext_ipp'
[ 30%] No build step for 'ext_ipp'
[ 30%] No install step for 'ext_ipp'
[ 30%] Completed 'ext_ipp'
[ 32%] Built target glfw
[ 32%] Built target ext_ipp
HEAD is now at 473592d Add SECURITY.md, restrict github actions permissions
[ 32%] No patch step for 'open3d_ml'
[ 32%] No configure step for 'open3d_ml'
[ 32%] No build step for 'open3d_ml'
[ 35%] Built target 3rdparty_qhullcpp
[ 35%] No install step for 'open3d_ml'
[ 36%] Completed 'open3d_ml'
[ 36%] Built target open3d_ml
[ 39%] Built target tbb
[ 39%] Built target ml_contrib
[ 39%] Built target camera
[ 40%] Built target tpipelines
[ 41%] Built target webrtc_server
[ 42%] Built target tio
[ 43%] Built target tgeometry
[ 46%] Built target utility
[ 47%] Built target pipelines
[ 48%] Built target tpipelines_kernel
[ 50%] Built target tgeometry_kernel
[ 53%] Built target data
[ 57%] Built target geometry
[ 57%] Building CXX object cpp/open3d/io/CMakeFiles/io.dir/file_format/FileOBJ.cpp.o
[ 61%] Built target GUI
[ 61%] Building CXX object cpp/open3d/core/CMakeFiles/core.dir/nns/NanoFlannIndex.cpp.o
[ 61%] Building CUDA object cpp/open3d/core/CMakeFiles/core.dir/nns/KnnSearchOps.cu.o
[ 68%] Built target visualization
In file included from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_tree.h:63,
from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/map:60,
from /mnt/home/gwoollard/ceph/repos/Open3D/build/tinyobjloader/src/ext_tinyobjloader/tiny_obj_loader.h:62,
from /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp:8:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const long unsigned int; _Up = long unsigned int; bool _IsMove = false]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:501:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:528:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:535:31,
inlined from '_OI std::copy(_II, _II, _OI) [with _II = const long unsigned int*; _OI = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:626:7,
inlined from 'static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = const long unsigned int*; _ForwardIterator = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_uninitialized.h:147:27,
inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = const long unsigned int*; _ForwardIterator = long unsigned int*]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_uninitialized.h:185:15,
inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = const long unsigned int*; _ForwardIterator = long unsigned int*; _Tp = long unsigned int]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_uninitialized.h:372:37,
inlined from 'void std::vector<_Tp, _Alloc>::_M_assign_aux(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const long unsigned int*; _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/vector.tcc:339:35,
inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(std::initializer_list<_Tp>) [with _Tp = long unsigned int; _Alloc = std::allocator<long unsigned int>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:787:21,
inlined from 'bool open3d::io::WriteTriangleMeshToOBJ(const std::string&, const open3d::geometry::TriangleMesh&, bool, bool, bool, bool, bool, bool)' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp:285:47:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_algobase.h:434:30: error: 'void* __builtin_memcpy(void*, const void*, long unsigned int)' forming offset 8 is out of the bounds [0, 8] of object '<anonymous>' with type 'const long unsigned int [1]' [-Werror=array-bounds]
434 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp: In function 'bool open3d::io::WriteTriangleMeshToOBJ(const std::string&, const open3d::geometry::TriangleMesh&, bool, bool, bool, bool, bool, bool)':
/mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/io/file_format/FileOBJ.cpp:285:47: note: '<anonymous>' declared here
285 | material_id_faces_map[mi] = {i};
| ^
cc1plus: all warnings being treated as errors
make[3]: *** [cpp/open3d/io/CMakeFiles/io.dir/build.make:342: cpp/open3d/io/CMakeFiles/io.dir/file_format/FileOBJ.cpp.o] Error 1
make[2]: *** [CMakeFiles/Makefile2:2546: cpp/open3d/io/CMakeFiles/io.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
In file included from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/x86_64-conda-linux-gnu/bits/c++allocator.h:33,
from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/allocator.h:46,
from /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/vector:61,
from /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannIndex.h:10,
from /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannIndex.cpp:8:
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = float]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775804] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = float]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const float*; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const float*; <template-parameter-2-2> = void; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = float]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, long int, open3d::core::nns::NeighborSearchAllocator<float, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775804] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = float]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = float]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const float*; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const float*; <template-parameter-2-2> = void; _Tp = float; _Alloc = std::allocator<float>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<float, int, open3d::core::nns::NeighborSearchAllocator<float, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, int>&)::<lambda(const float*, const float*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<float, long int, open3d::core::nns::NeighborSearchAllocator<float, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const float*, size_t, const float*, size_t, const float*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<float, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = double]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775800] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = double]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const double*; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = double]',
inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::deallocate(allocator_type&, pointer, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:496:23,
inlined from 'void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:387:19,
inlined from 'std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:366:15,
inlined from 'std::vector<_Tp, _Alloc>::~vector() [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:735:7,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:126:5,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, long int, open3d::core::nns::NeighborSearchAllocator<double, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:169:33: error: 'void operator delete(void*, std::size_t)' called on pointer '<unknown>' with nonzero offset [1, 9223372036854775800] [-Werror=free-nonheap-object]
169 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n));
| ^
In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = double]',
inlined from 'static _Tp* std::allocator_traits<std::allocator<_Tp1> >::allocate(allocator_type&, size_type) [with _Tp = double]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/alloc_traits.h:464:28,
inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:378:33,
inlined from 'void std::vector<_Tp, _Alloc>::_M_range_initialize(_ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:1689:25,
inlined from 'std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = const double*; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]' at /mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/stl_vector.h:708:23,
inlined from 'open3d::core::nns::impl::{anonymous}::_KnnSearchCPU<double, int, open3d::core::nns::NeighborSearchAllocator<double, int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, int, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, int>&)::<lambda(const double*, const double*, size_t)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:123:24,
inlined from 'open3d::core::nns::impl::{anonymous}::_RadiusSearchCPU<double, long int, open3d::core::nns::NeighborSearchAllocator<double, long int>, 1>(open3d::core::nns::NanoFlannIndexHolderBase*, int64_t*, size_t, const double*, size_t, const double*, size_t, const double*, bool, bool, bool, bool, open3d::core::nns::NeighborSearchAllocator<double, long int>&)::<lambda(const tbb::detail::d1::blocked_range<long unsigned int>&)>' at /mnt/home/gwoollard/ceph/repos/Open3D/cpp/open3d/core/nns/NanoFlannImpl.h:258:41:
/mnt/home/gwoollard/software/mambaforge/envs/flexutils-tensorflow/lib/gcc/x86_64-conda-linux-gnu/12.4.0/include/c++/bits/new_allocator.h:148:55: note: returned from 'void* operator new(std::size_t)'
148 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp)));
| ^
cc1plus: all warnings being treated as errors
make[3]: *** [cpp/open3d/core/CMakeFiles/core.dir/build.make:1116: cpp/open3d/core/CMakeFiles/core.dir/nns/NanoFlannIndex.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[2]: *** [CMakeFiles/Makefile2:2366: cpp/open3d/core/CMakeFiles/core.dir/all] Error 2
make[1]: *** [CMakeFiles/Makefile2:4090: cpp/pybind/CMakeFiles/install-pip-package.dir/rule] Error 2
make: *** [Makefile:1229: install-pip-package] Error 2
##### Done! #####
##### Installation finished succesfully! #####
(flexutils-tensorflow) (base) [gwoollard@workergpu004 Flexutils-Toolkit]$
Regarding https://github.com/flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1/pull/100
I had issues installing, specifically this line of the installs https://github.com/I2PC/Flexutils-Toolkit/blob/master/install_open3d.sh#L190
Below is my conda env (versin)