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I2PC / scipion

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
http://scipion.i2pc.es
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broken viewer of interactive e2boxer #1953

Closed azazellochg closed 5 years ago

azazellochg commented 5 years ago

Describe the bug I picked particles in EMAN2 GUI and saved output. After clicking Analyze results I get:

('writeCoordsConfig: state=', 'Manual')
Exception in Tkinter callback
Traceback (most recent call last):
  File "/home/azazello/soft/scipion-devel/software/lib/python2.7/lib-tk/Tkinter.py", line 1541, in __call__
    return self.func(*args)
  File "/home/azazello/soft/scipion-devel/pyworkflow/gui/project/viewprotocols.py", line 1984, in _analyzeResultsClicked
    self._analyzeResults(prot)
  File "/home/azazello/soft/scipion-devel/pyworkflow/gui/project/viewprotocols.py", line 1964, in _analyzeResults
    firstViewer.visualize(prot)
  File "/home/azazello/soft/scipion-devel/pyworkflow/viewer.py", line 149, in visualize
    for view in self._visualize(obj, **kwargs):
TypeError: 'NoneType' object is not iterable

I am still trying to debug why this happens... There were some changes related to default viewers, can anyone comment on this?

Desktop (please complete the following information): 2.0.0-fixes

Additional context Right clicking on the output and choosing DataViewer works!

azazellochg commented 5 years ago

must be related to https://github.com/I2PC/scipion/issues/1915 and https://github.com/I2PC/scipion/pull/1916

pconesa commented 5 years ago

fixed at eman repo

azazellochg commented 5 years ago

Thank you Pablo!

pconesa commented 5 years ago

;-) https://github.com/scipion-em/scipion-em-eman2/pull/19