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I2PC / scipion

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
http://scipion.i2pc.es
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relion reconstruct broken #1957

Closed JuhaHuiskonen closed 5 years ago

JuhaHuiskonen commented 5 years ago

Hi @delarosatrevin

Protocol 'relion - reconstruct' does not start anymore. It fails with error:

00017: File "...pyworkflow/em/packages/relion/protocol_reconstruct.py", line 129, in _insertReconstructStep 00018: if self.numberOfTheads > 1 and isVersion2(): 00019: AttributeError: 'ProtRelionReconstruct' object has no attribute 'numberOfTheads'

I am using 1.2.1.facilities (sdevel relion3 53459999)

delarosatrevin commented 5 years ago

Hi @JuhaHuiskonen, thanks for reporting it.

I have fixed! It was a stupid type that caused the bug, I'm really sorry for the inconveniences.

Please update you branch to sdevel_relion3 and make sure you have updated to the last commit. It should display something like the following:

> scipion version

Scipion v1.2.2-rc (2019-03-24) Constantino (sdevel-relion3 5967690)

 > git log -1
commit 5967690e5b016fde4de6133378433973df1cad1b
Author: Jose Miguel de la Rosa Trevin <delarosatrevin@gmail.com>
Date:   Sun Mar 24 16:48:58 2019 +0100

    Fixed protcol_reconstruct typo in numberOfThreads (causing a bug)

Please note that threads are not available for this protocol in Relion3, so you should use MPI.