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I2PC / scipion

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
http://scipion.i2pc.es
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motioncorr does not write out FAILED_all.txt file anymore #2030

Closed andreanans closed 5 years ago

andreanans commented 5 years ago

Hi,

I noticed that the FAILED_all.txt file is not written out anymore during motion correction. This was very useful for identifying movies that failed to align. Is there anyway to get this back? in 2.0?

Edit: I compared protocol_align_movies.py in 1.21 and 2.0 and all the code that generates the FAILED_all.txt list is missing from 2.0. I suppose I can try copying the relevant code to get this working again but is it at all possible to add back the functionality in the future? Thank you!

pconesa commented 5 years ago

Hi @andreanans , could you post this at the motioncor plugin repo, I'd transfer it, but github does not allow to do this across organizations, and it's better if you remain as the author.

https://github.com/scipion-em/scipion-em-motioncorr/issues

pconesa commented 5 years ago

please

pconesa commented 5 years ago

Added here --> https://github.com/scipion-em/scipion-em-motioncorr/issues/16

azazellochg commented 5 years ago

@pconesa why this is motioncorr issue? This code was in protocol_align_movies.py so this is scipion issue