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I2PC / scipion

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
http://scipion.i2pc.es
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Motioncorr problem in streaming mode #2037

Closed vabrishami closed 5 years ago

vabrishami commented 5 years ago

Describe the bug

In streaming mode, Motioncorr (2-1.2.6) reads one out of 20 movies from import movies protocol and for example for 100 movies produces 5 or 6 aligned micrographs. In Scipion 1.2 Motioncorr (motioncor2-1.0.5) it works fine and processes all the movies.

To Reproduce Steps to reproduce the behavior:

  1. Make a project.
  2. Add import movies and Motioncorr protocols.
  3. Run and schedule the protocols.

Expected behavior

Motioncorr should process all the movies of the import movies protocol.

System

pconesa commented 5 years ago

Thanks @vabrishami , just to clarify:

"Reads one out of 20" means it fails for 19?

azazellochg commented 5 years ago

can we see the log files please?

vabrishami commented 5 years ago

@pconesa It seems there’s no error since there’s nothing in the log about error.

vabrishami commented 5 years ago

@azazellochg I will send it tomorrow since I am out. Thanks

vabrishami commented 5 years ago

Hello guys,

It was a memory problem on GPU because of wrong projection of threads on GPU. Now it works perfectly.