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I2PC / scipion

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
http://scipion.i2pc.es
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'relion - post-processing' protocol does not update calibrated pixel size #2068

Closed JuhaHuiskonen closed 4 years ago

JuhaHuiskonen commented 4 years ago

A calibrated pixel size can be given to this protocol. However this value is not reflected in the outputVolume.

delarosatrevin commented 4 years ago

So, the output volume should have the calibrated pixel size?

JuhaHuiskonen commented 4 years ago

yes, that would make sense, both in Scipion metadata and the header of the map file written out.

delarosatrevin commented 4 years ago

I have fixed this in the following commit: https://github.com/scipion-em/scipion-em-relion/commit/773f982c2fb769427a58aa086a95b9b6ab775a2f

It will be released in the next scipion-em-relion pluglin version.

I updated the output pixel size in the Scipion metadata. I also checked that the mrc volume has the correct value (using mrcfile library).