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I2PC / scipion

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
http://scipion.i2pc.es
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relion-3D multi-body fails in the last step 'createOutputStep' #2070

Closed mohsenkazemi closed 4 years ago

mohsenkazemi commented 4 years ago

relion-3D multi-body fails in the last step and is not providing output. The error is:

Traceback (most recent call last): 00772: File "/share/apps/scipion/pyworkflow/protocol/protocol.py", line 186, in run 00773: self._run() 00774: File "/share/apps/scipion/pyworkflow/protocol/protocol.py", line 237, in _run 00775: resultFiles = self._runFunc() 00776: File "/share/apps/scipion/pyworkflow/protocol/protocol.py", line 233, in _runFunc 00777: return self._func(*self._args) 00778: File "/share/apps/scipion/software/lib/python2.7/site-packages/relion/protocols/protocol_multibody.py", line 242, in createOutputStep 00779: volume.setFileName(self._getFileName('outputVolume')) 00780: File "/share/apps/scipion/pyworkflow/protocol/protocol.py", line 841, in _getFileName 00781: return self.__filenamesDict[key] % kwargs 00782: KeyError: 'outputVolume'

azazellochg commented 4 years ago

Thank you @mohsenkazemi , that's a known bug we hope to fix soon. https://github.com/scipion-em/scipion-em-relion/issues/113