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I2PC / xmippCore

Core functions for Xmipp and sharing with other packages (like Scipion)
GNU General Public License v3.0
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Added support for reading movies in EER format #197

Closed oierlauzi closed 9 months ago

sonarcloud[bot] commented 11 months ago

Quality Gate Passed Quality Gate passed

The SonarCloud Quality Gate passed, but some issues were introduced.

67 New issues
0 Security Hotspots
No data about Coverage
0.0% Duplication on New Code

See analysis details on SonarCloud

albertmena commented 9 months ago

Test it with image convert (File to test: https://fei-box.app.box.com/s/3enc37s3nnfdh558ovysxus8bcyrc8t4)

oierlauzi commented 9 months ago

EER files are a bit special as rendering parameters need to be provided. To do so, these parameters are appended to de filename with a preceding #:

path/to.eer#A,B,C

where

albertmena commented 9 months ago

Something I'm doing wrong?

xmipp_image_convert -i /home/agarcia/Downloads/FoilHole_29355520_Data_29330528_29330530_20200329_234551_Fractions.mrc.eer#32,4k,uint8 -o /home/agarcia/Downloads/EER_out.mrc.eer Aborted (core dumped)

sonarcloud[bot] commented 9 months ago

Quality Gate Passed Quality Gate passed

The SonarCloud Quality Gate passed, but some issues were introduced.

78 New issues
0 Security Hotspots
No data about Coverage
0.0% Duplication on New Code

See analysis details on SonarCloud

albertmena commented 9 months ago

Something I'm doing wrong?

xmipp_image_convert -i /home/agarcia/Downloads/FoilHole_29355520_Data_29330528_29330530_20200329_234551_Fractions.mrc.eer#32,4k,uint8 -o /home/agarcia/Downloads/EER_out.mrc.eer Aborted (core dumped)

./xmipp cleanBin and ./xmipp After that it works, just a warning (not sure the reason) TIFFReadDirectory: Warning, Unknown field with tag 65001 (0xfde9) encountered.

oierlauzi commented 9 months ago

Something I'm doing wrong? xmipp_image_convert -i /home/agarcia/Downloads/FoilHole_29355520_Data_29330528_29330530_20200329_234551_Fractions.mrc.eer#32,4k,uint8 -o /home/agarcia/Downloads/EER_out.mrc.eer Aborted (core dumped)

./xmipp cleanBin and ./xmipp After that it works, just a warning (not sure the reason) TIFFReadDirectory: Warning, Unknown field with tag 65001 (0xfde9) encountered.

Warnings are normal, as EER makes use of non-standard TIFF tags