Add handling of multisample vcf, and graph output

IARCbioinfo / NGSCheckMate-nf

Nextflow pipeline to detect matched BAMs with NGSCheckMate

GNU General Public License v3.0

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Closed nalcala closed 5 years ago

nalcala commented 5 years ago

uses bcftools to find the different samples from a same vcf
optionally uses a revised version of script ngscheckmate2xgmml.R to generate a cytoscape-ready graph with matches, if the necessary label file is provided