IARCbioinfo / needlestack

Multi-sample somatic variant caller
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adapt --plots option to the annotation mode #167

Closed tdelhomme closed 4 years ago

tdelhomme commented 7 years ago

At the moment, due to previous versions, the annotation mode only recognize the flag --no_plots to do not produce PDFs. But in the basic mode, this option was replace by --plots which requires a value, see here. The same option should be use in the annotation mode, and for this we need to consider two possible values for the --plots option: ALL or NONE (default).