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IARCbioinfo / platypus-nf

Platypus germline variant calling with nextflow
GNU General Public License v3.0
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migrate to CircleCI 2.0 #16

Open tdelhomme opened 6 years ago

tdelhomme commented 6 years ago

We should adapt our CircleCI tests to the new 2.0 version. Follow the guidelines, and take example of their webinars.

With 2.0, the CircleCi yaml file would not be circle.yml anymore but .circleci/config.yml.

Major improvement is integration of workflows.

tdelhomme commented 6 years ago

A good practice would be to use workflows to test our output files, e.g. compute size of VCF (for the moment if our VCF is empty there is not an error).

tdelhomme commented 6 years ago

look at migration steps: https://circleci.com/docs/2.0/migrating-from-1-2/#using-the-10-to-20-config-translation-endpoint