No Bed, ressources and file staging

IARCbioinfo / strelka2-nf

GNU General Public License v3.0

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No Bed, ressources and file staging #2

Closed mfoll closed 6 years ago

mfoll commented 6 years ago

I fixed a bug when no Bed file is provided (pipeline was crashing). I added the cpu and mem in nextflow process. I improved the way files are staged in nextflow work dir. This remains to be done for BAM files in germline mode.