nalcala
commented
3 years ago - add INFO field for AF and COV to VCF to avoid crashes for downstream analyses with bcftools when using AF option
- rename tn_pairs to input_file (because it now also works for germline mode)
- add option to provide sample name to be used in VCF naming (triggered when sample column is detected in input_file)
- add option to provide vcf to perform genotyping (triggered when vcf column is detected in input_file)