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IBBM / Cascaded-FCN

Source code for the MICCAI 2016 Paper "Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional NeuralNetworks and 3D Conditional Random Fields"
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Issue with imshow in cascaded_unet_inference.ipynb #14

Closed scotwilli closed 7 years ago

scotwilli commented 7 years ago

RuntimeError: Could not create write struct with imshow

which library to use for imshow - opencv or matplotlib?

mohamed-ezz commented 7 years ago

There's a helper function named imshow in the notebook. Internally it uses plt.imshow() (from matplotlib)

scotwilli commented 7 years ago

I added the line import matplotlib.pyplot as plt import dicom import natsort import glob, os import re import matplotlib.pyplot as plt

But still Iam getting the same issue. I uninstalled and re-installed matplotlib. But still couldnt get away with the issue. cascade-net-error

mohamed-ezz commented 7 years ago

You seem to be invoking a wrong imshow. Please check imshow?.

You should be using the imshow defined above, in the notebook