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IBCNServices / GENDIS

Contains an implementation (sklearn API) of the algorithm proposed in "GENDIS: GEnetic DIscovery of Shapelets" and code to reproduce all experiments.
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GENDIS Install problem #1

Closed humaun21 closed 5 years ago

humaun21 commented 5 years ago

I am trying to install gendis. But I can't install it. I used 'pip install gendis' in my command prompt. But It's failed. I am using python 3.6.5

At the end there is this error

" ---------------------------------------- Command ""c:\users\humaun rashid\anaconda3\python.exe" -u -c "import setuptools, tokenize;file='C:\Users\HUMAUN~1\AppData\Local\Temp\pip-install-m90pf7zc\tslearn\setup.py';f=getattr(tokeni ze, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record C:\Users\HUMAUN~1\AppData\Local\Temp\pip-record-zwcfs0k2\install-recor d.txt --single-version-externally-managed --compile" failed with error code 1 in C:\Users\HUMAUN~1\AppData\Local\Temp\pip-install-m90pf7zc\tslearn\"

GillesVandewiele commented 5 years ago

Hello,

Seems like something went wrong while compiling tslearn, a dependency of GENDIS, but I'm not really sure what... Could you clone the repository and try run (sudo) python setup.py install? Or maybe copy-paste the entire log?

humaun21 commented 5 years ago

Hi Thanks for you reply It's not working ....Could you see last line. Do I need Microsoft Visual C++ 14.0 .??

C:\Users\GENDIS>python setup.py install running install running bdist_egg running egg_info creating GENDIS.egg-info writing GENDIS.egg-info\PKG-INFO writing dependency_links to GENDIS.egg-info\dependency_links.txt writing requirements to GENDIS.egg-info\requires.txt writing top-level names to GENDIS.egg-info\top_level.txt writing manifest file 'GENDIS.egg-info\SOURCES.txt' reading manifest file 'GENDIS.egg-info\SOURCES.txt' writing manifest file 'GENDIS.egg-info\SOURCES.txt' installing library code to build\bdist.win-amd64\egg running install_lib running build_py creating build creating build\lib creating build\lib\gendis copying gendis\genetic.py -> build\lib\gendis copying gendis\mstamp_stomp.py -> build\lib\gendis copying gendis\util.py -> build\lib\gendis copying gendis__init__.py -> build\lib\gendis creating build\bdist.win-amd64 creating build\bdist.win-amd64\egg creating build\bdist.win-amd64\egg\gendis copying build\lib\gendis\genetic.py -> build\bdist.win-amd64\egg\gendis copying build\lib\gendis\mstamp_stomp.py -> build\bdist.win-amd64\egg\gendis copying build\lib\gendis\util.py -> build\bdist.win-amd64\egg\gendis copying build\lib\gendis__init.py -> build\bdist.win-amd64\egg\gendis byte-compiling build\bdist.win-amd64\egg\gendis\genetic.py to genetic.cpython-36.pyc byte-compiling build\bdist.win-amd64\egg\gendis\mstamp_stomp.py to mstamp_stomp.cpython-36.pyc byte-compiling build\bdist.win-amd64\egg\gendis\util.py to util.cpython-36.pyc byte-compiling build\bdist.win-amd64\egg\gendis\init.py to init__.cpython-36.pyc creating build\bdist.win-amd64\egg\EGG-INFO copying GENDIS.egg-info\PKG-INFO -> build\bdist.win-amd64\egg\EGG-INFO copying GENDIS.egg-info\SOURCES.txt -> build\bdist.win-amd64\egg\EGG-INFO copying GENDIS.egg-info\dependency_links.txt -> build\bdist.win-amd64\egg\EGG-INFO copying GENDIS.egg-info\requires.txt -> build\bdist.win-amd64\egg\EGG-INFO copying GENDIS.egg-info\top_level.txt -> build\bdist.win-amd64\egg\EGG-INFO zip_safe flag not set; analyzing archive contents... creating dist creating 'dist\GENDIS-1.0.7-py3.6.egg' and adding 'build\bdist.win-amd64\egg' to it removing 'build\bdist.win-amd64\egg' (and everything under it) Processing GENDIS-1.0.7-py3.6.egg Copying GENDIS-1.0.7-py3.6.egg to c:\users\humaun rashid\anaconda3\lib\site-packages Adding GENDIS 1.0.7 to easy-install.pth file

Installed c:\users\humaun rashid\anaconda3\lib\site-packages\gendis-1.0.7-py3.6.egg Processing dependencies for GENDIS==1.0.7 Searching for tslearn==0.1.18.3 Reading https://pypi.org/simple/tslearn/ Downloading https://files.pythonhosted.org/packages/07/da/f93a34e488d6859b780eb55b91193fa823f4118446db7923b32c4a019cb6/tslearn-0.1.18.3.tar.gz#sha256=b312ff133014590068caeb4fa8d0a8e597 aa8289d77a549e36577264e12 Best match: tslearn 0.1.18.3 Processing tslearn-0.1.18.3.tar.gz Writing C:\Users\HUMAUN~1\AppData\Local\Temp\easy_install-kv492jpx\tslearn-0.1.18.3\setup.cfg Running tslearn-0.1.18.3\setup.py -q bdist_egg --dist-dir C:\Users\HUMAUN~1\AppData\Local\Temp\easy_install-kv492jpx\tslearn-0.1.18.3\egg-dist-tmp-7o38kgra error: Setup script exited with error: Microsoft Visual C++ 14.0 is required. Get it with "Microsoft Visual C++ Build Tools": http://landinghub.visualstudio.com/visual-cpp-build-tools

GillesVandewiele commented 5 years ago

Hmm would seem weird to install an entire development suite, when you probably only need a C++ compiler. Then again, it is Windows...

I cannot really help out much with windows-specific issues, which this one seems to be. You could try to install the C++ suite. The provided link is dead, but this one works. Someone also suggested pip install --upgrade setuptools

Hope you can get it to work :)

humaun21 commented 5 years ago

Hi Thanks again for your response. Now gendis is successfully installed after installing Microsoft Visual C++ 14.0. Now I am trying to run the Example notebook you provided . But it says No module named 'data.load_all_datasets' found(although i installed 'pip install data') and no module 'genetic' found in my notebook. Should I clone your repository and put it somewhere? If then where? May be it silly question to ask but I couldn't understand. Could you make me clear this point? Thanks for your time?

humaun21 commented 5 years ago

Hi Now I understand. I put manually data folder inside gendis. Everything works fine. Now my import is :+1: 

from gendis.data.load_all_datasets import load_data_train_test
from gendis.genetic import GeneticExtractor

Have a nice time.

GillesVandewiele commented 5 years ago

Cool, glad to hear you got it up and running. And thank you for reporting that bug, I'll fix it in the nearby future so that you can pip install without cloning the repo.

humaun21 commented 5 years ago

Hi Yeah. Nice to hear from you. That must me great. Best wishes for you.

Best Rashid