Open kimdn opened 1 year ago
Even after I commented out these replace lines, still I see
(fold2seq) [kimd999@tlogin3 data]$ ./run_this.sh
total number of seqs: 470679
removed # seqs in ss.txt: 9337
Traceback (most recent call last):
File "fold_feat_gen.py", line 152, in <module>
x1,x2 = selection(line[0] , line[2], int(line[3]), int(line[4]), seq_ss)
File "fold_feat_gen.py", line 79, in selection
raise ValueError("encounter inconsistent pdb structure:"+pdb_path+chain+" "+str(start)+','+str(end))
ValueError: encounter inconsistent pdb structure:example/1aj4A00-2-161A 2,161
both at my mac and linux
I'm not sure whether https://github.com/IBM/fold2seq/issues/1 is fixed.
With example data
I see