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IBM / nlc-icd10-classifier

A simple web app that shows how Watson's Natural Language Classifier (NLC) can classify ICD-10 code. The app is written in Python using the Flask framework and leverages the Watson Developer Cloud Python SDK
https://developer.ibm.com/patterns/classify-icd-10-data-with-watson/
Apache License 2.0
113 stars 57 forks source link

I'm unable to start this on Desktop and online... #44

Closed Bewinxed closed 4 years ago

Bewinxed commented 4 years ago

Hello, Not sure if this is still working but I'm trying to make this work and I'm unable to.

When running it locally I get:

mytestenv) (base) PS F:\Programs\nlc-icd10-classifier> python app.py                                                   Traceback (most recent call last):
  File "app.py", line 34, in <module>
    iam_apikey=nlc_iam_apikey

When running it on Watson Cloud I get this:


Pipeline image: latest
Preparing the build artifacts...
Pulling pipeline base image latest ...
cf login -a "https://api.eu-gb.cf.cloud.ibm.com" -u apikey -p "****" -o "bewinxed" -s "dev" 
API endpoint: https://api.eu-gb.cf.cloud.ibm.com
Authenticating...
OK

Targeted org bewinxed

Targeted space dev

API endpoint:   https://api.eu-gb.cf.cloud.ibm.com (API version: 2.144.0)
User:           omatar@asu.edu
Org:            bewinxed
Space:          dev
Pushing from manifest to org bewinxed / space dev as omatar@asu.edu...
Using manifest file /home/pipeline/5b17f1f3-034a-4608-a7f9-842e4a1c5fc3/manifest.yml
Deprecation warning: Use of 'buildpack' attribute in manifest is deprecated in favor of 'buildpacks'. Please see https://docs.cloudfoundry.org/devguide/deploy-apps/manifest-attributes.html#deprecated for alternatives and other app manifest deprecations. This feature will be removed in the future.

Deprecation warning: Route component attributes 'domain', 'domains', 'host', 'hosts' and 'no-hostname' are deprecated. Found: domain.
Please see https://docs.cloudfoundry.org/devguide/deploy-apps/manifest-attributes.html#deprecated for the currently supported syntax and other app manifest deprecations. This feature will be removed in the future.

Using manifest file /home/pipeline/5b17f1f3-034a-4608-a7f9-842e4a1c5fc3/manifest.yml

Updating app nlc-icd10-classifier-20200205001433954 in org bewinxed / space dev as omatar@asu.edu...
OK

Using route nlc-icd10-classifier-20200205001433954.eu-gb.mybluemix.net
Uploading nlc-icd10-classifier-20200205001433954...
Uploading app files from: /home/pipeline/5b17f1f3-034a-4608-a7f9-842e4a1c5fc3
Uploading 40K, 26 files

Done uploading
OK

Stopping app nlc-icd10-classifier-20200205001433954 in org bewinxed / space dev as omatar@asu.edu...
OK

Starting app nlc-icd10-classifier-20200205001433954 in org bewinxed / space dev as omatar@asu.edu...
Downloading python_buildpack...
Downloaded python_buildpack
Cell 93031588-3d1d-4920-9a21-7490000a2b07 creating container for instance 239c2935-947e-4316-bd46-b2a73fa7b645
Cell 93031588-3d1d-4920-9a21-7490000a2b07 successfully created container for instance 239c2935-947e-4316-bd46-b2a73fa7b645
Downloading app package...
Downloading build artifacts cache...
Downloaded build artifacts cache (35.8M)
Downloaded app package (2.5M)
-----> Python Buildpack version 1.7.2
-----> Supplying Python
-----> Installing python 2.7.17
       Copy [/tmp/cache/final/dependencies/1c95d2653927c4480a843cc409b4ad10d0c4731956ed9d6eb0b8044213d460dd/python-2.7.17-linux-x64-cflinuxfs3-7061c97e.tgz]
       **WARNING** python 2.7.x will no longer be available in new buildpacks released after 2020-01-01.
       See: https://www.python.org/dev/peps/pep-0373/
-----> Installing pip-pop 0.1.4
       Copy [/tmp/cache/final/dependencies/3b86fb2cd9c13268f8858fd0ccb2f9eaf11295a51804b7075fe38d7e2a471191/pip-pop-0.1.4-0a3b0f1b.tar.gz]
-----> Running Pip Install
       DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
       Collecting python-dotenv (from -r /tmp/app/requirements.txt (line 1))
         Using cached https://files.pythonhosted.org/packages/f7/cb/b6c5c6e3e2d6ee3268dcf1b027979ac8927914b12d8a7f11f491df0e82a7/python_dotenv-0.10.5-py2.py3-none-any.whl
       Collecting Flask (from -r /tmp/app/requirements.txt (line 2))
         Using cached https://files.pythonhosted.org/packages/9b/93/628509b8d5dc749656a9641f4caf13540e2cdec85276964ff8f43bbb1d3b/Flask-1.1.1-py2.py3-none-any.whl
       Collecting ibm-watson (from -r /tmp/app/requirements.txt (line 3))
         Using cached https://files.pythonhosted.org/packages/da/f4/7e256026ee22c75a630c6de53eb45b6fef4840ac6728b80a92dd2e523a1a/ibm-watson-4.2.1.tar.gz
       Collecting typing; python_version < "3.5" (from python-dotenv->-r /tmp/app/requirements.txt (line 1))
         Using cached https://files.pythonhosted.org/packages/22/30/64ca29543375759dc589ade14a6cd36382abf2bec17d67de8481bc9814d7/typing-3.7.4.1-py2-none-any.whl
       Collecting Werkzeug>=0.15 (from Flask->-r /tmp/app/requirements.txt (line 2))
         Using cached https://files.pythonhosted.org/packages/c2/e4/a859d2fe516f466642fa5c6054fd9646271f9da26b0cac0d2f37fc858c8f/Werkzeug-0.16.1-py2.py3-none-any.whl
       Collecting click>=5.1 (from Flask->-r /tmp/app/requirements.txt (line 2))
         Using cached https://files.pythonhosted.org/packages/fa/37/45185cb5abbc30d7257104c434fe0b07e5a195a6847506c074527aa599ec/Click-7.0-py2.py3-none-any.whl
       Collecting Jinja2>=2.10.1 (from Flask->-r /tmp/app/requirements.txt (line 2))
         Using cached https://files.pythonhosted.org/packages/27/24/4f35961e5c669e96f6559760042a55b9bcfcdb82b9bdb3c8753dbe042e35/Jinja2-2.11.1-py2.py3-none-any.whl
       Collecting itsdangerous>=0.24 (from Flask->-r /tmp/app/requirements.txt (line 2))
         Using cached https://files.pythonhosted.org/packages/76/ae/44b03b253d6fade317f32c24d100b3b35c2239807046a4c953c7b89fa49e/itsdangerous-1.1.0-py2.py3-none-any.whl
       Collecting requests<3.0,>=2.0 (from ibm-watson->-r /tmp/app/requirements.txt (line 3))
         Using cached https://files.pythonhosted.org/packages/51/bd/23c926cd341ea6b7dd0b2a00aba99ae0f828be89d72b2190f27c11d4b7fb/requests-2.22.0-py2.py3-none-any.whl
       Collecting python_dateutil>=2.5.3 (from ibm-watson->-r /tmp/app/requirements.txt (line 3))
         Using cached https://files.pythonhosted.org/packages/d4/70/d60450c3dd48ef87586924207ae8907090de0b306af2bce5d134d78615cb/python_dateutil-2.8.1-py2.py3-none-any.whl
       Collecting websocket-client==0.48.0 (from ibm-watson->-r /tmp/app/requirements.txt (line 3))
         Using cached https://files.pythonhosted.org/packages/8a/a1/72ef9aa26cfe1a75cee09fc1957e4723add9de098c15719416a1ee89386b/websocket_client-0.48.0-py2.py3-none-any.whl
       Collecting ibm_cloud_sdk_core==1.5.1 (from ibm-watson->-r /tmp/app/requirements.txt (line 3))
         Using cached https://files.pythonhosted.org/packages/b7/f6/10d5271c807d73d236e6ae07b68035fed78b28b5ab836704d34097af3986/ibm-cloud-sdk-core-1.5.1.tar.gz
       Collecting MarkupSafe>=0.23 (from Jinja2>=2.10.1->Flask->-r /tmp/app/requirements.txt (line 2))
         Using cached https://files.pythonhosted.org/packages/fb/40/f3adb7cf24a8012813c5edb20329eb22d5d8e2a0ecf73d21d6b85865da11/MarkupSafe-1.1.1-cp27-cp27mu-manylinux1_x86_64.whl
       Collecting chardet<3.1.0,>=3.0.2 (from requests<3.0,>=2.0->ibm-watson->-r /tmp/app/requirements.txt (line 3))
         Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl
       Collecting idna<2.9,>=2.5 (from requests<3.0,>=2.0->ibm-watson->-r /tmp/app/requirements.txt (line 3))
         Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
       Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 (from requests<3.0,>=2.0->ibm-watson->-r /tmp/app/requirements.txt (line 3))
         Using cached https://files.pythonhosted.org/packages/e8/74/6e4f91745020f967d09332bb2b8b9b10090957334692eb88ea4afe91b77f/urllib3-1.25.8-py2.py3-none-any.whl
       Collecting certifi>=2017.4.17 (from requests<3.0,>=2.0->ibm-watson->-r /tmp/app/requirements.txt (line 3))
         Using cached https://files.pythonhosted.org/packages/b9/63/df50cac98ea0d5b006c55a399c3bf1db9da7b5a24de7890bc9cfd5dd9e99/certifi-2019.11.28-py2.py3-none-any.whl
       Collecting six>=1.5 (from python_dateutil>=2.5.3->ibm-watson->-r /tmp/app/requirements.txt (line 3))
         Using cached https://files.pythonhosted.org/packages/65/eb/1f97cb97bfc2390a276969c6fae16075da282f5058082d4cb10c6c5c1dba/six-1.14.0-py2.py3-none-any.whl
       Collecting PyJWT>=1.7.1 (from ibm_cloud_sdk_core==1.5.1->ibm-watson->-r /tmp/app/requirements.txt (line 3))
         Using cached https://files.pythonhosted.org/packages/87/8b/6a9f14b5f781697e51259d81657e6048fd31a113229cf346880bb7545565/PyJWT-1.7.1-py2.py3-none-any.whl
       Installing collected packages: typing, python-dotenv, Werkzeug, click, MarkupSafe, Jinja2, itsdangerous, Flask, chardet, idna, urllib3, certifi, requests, six, python-dateutil, websocket-client, PyJWT, ibm-cloud-sdk-core, ibm-watson
         WARNING: The script dotenv is installed in '/tmp/contents197645253/deps/0/python/bin' which is not on PATH.
         Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
         WARNING: The script flask is installed in '/tmp/contents197645253/deps/0/python/bin' which is not on PATH.
         Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
         WARNING: The script chardetect is installed in '/tmp/contents197645253/deps/0/python/bin' which is not on PATH.
         Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
         WARNING: The script pyjwt is installed in '/tmp/contents197645253/deps/0/python/bin' which is not on PATH.
         Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
         Running setup.py install for ibm-cloud-sdk-core: started
           Running setup.py install for ibm-cloud-sdk-core: finished with status 'done'
         Running setup.py install for ibm-watson: started
           Running setup.py install for ibm-watson: finished with status 'done'
       Successfully installed Flask-1.1.1 Jinja2-2.11.1 MarkupSafe-1.1.1 PyJWT-1.7.1 Werkzeug-0.16.1 certifi-2019.11.28 chardet-3.0.4 click-7.0 ibm-cloud-sdk-core-1.5.1 ibm-watson-4.2.1 idna-2.8 itsdangerous-1.1.0 python-dateutil-2.8.1 python-dotenv-0.10.5 requests-2.22.0 six-1.14.0 typing-3.7.4.1 urllib3-1.25.8 websocket-client-0.48.0
       WARNING: You are using pip version 19.2.3, however version 20.0.2 is available.
       You should consider upgrading via the 'pip install --upgrade pip' command.
Exit status 0
Uploading droplet, build artifacts cache...
Uploading droplet...
Uploading build artifacts cache...
Uploaded build artifacts cache (35.8M)
Uploaded droplet (39.4M)
Uploading complete
Cell 93031588-3d1d-4920-9a21-7490000a2b07 stopping instance 239c2935-947e-4316-bd46-b2a73fa7b645
Cell 93031588-3d1d-4920-9a21-7490000a2b07 destroying container for instance 239c2935-947e-4316-bd46-b2a73fa7b645
Cell 93031588-3d1d-4920-9a21-7490000a2b07 successfully destroyed container for instance 239c2935-947e-4316-bd46-b2a73fa7b645

0 of 1 instances running, 1 starting
0 of 1 instances running, 1 starting
0 of 1 instances running, 1 starting
0 of 1 instances running, 1 starting
0 of 1 instances running, 1 starting
0 of 1 instances running, 1 starting
0 of 1 instances running, 1 starting
0 of 1 instances running, 1 starting
0 of 1 instances running, 1 starting
0 of 1 instances running, 1 starting
0 of 1 instances running, 1 starting
0 of 1 instances running, 1 starting
0 of 1 instances running, 1 crashed
FAILED
Error restarting application: Start unsuccessful

TIP: use 'cf logs nlc-icd10-classifier-20200205001433954 --recent' for more information

Finished: FAILED```
stevemar commented 4 years ago

@Bewinxed please try this again, the watson SDK had changed. I updated the code + instructions to use the latest version of the SDK (see #45) and pinned it at that version so it doesn't happen again.