zyndagj
commented
4 years ago Forcing python to compile using xl instead of gcc also fails
Open zyndagj opened 4 years ago
zyndagj
commented
4 years ago Forcing python to compile using xl instead of gcc also fails
den-run-ai
commented
4 years ago @zyndagj there is official Anaconda package for mpi4py with support for ppc64. But it relies on openmpi or mpich which are not linked with LSF, so would be limited to one node with the scheduler.
https://anaconda.org/anaconda/mpi4py https://anaconda.org/anaconda/openmpi https://anaconda.org/anaconda/mpich
zyndagj
commented
4 years ago That's for the suggestion. However, multi-node execution is a requirement. It also appears that installing it with anything besides spectrum will cause issues with the distributed ML packages.
Hello,
I support an IBM AC922 system with InfiniBand, Spectrum MPI, and the xl compiler. We rely on PowerAI for delivering customizable python environments backed by an ecosystem of pre-tuned machine learning packages. We were recently asked to support mpi4py and I have been unable to compile it in a conda environment. It will compile with the system python, so xl and spectrum seem to be configured fine - issues only arise in a conda environment. I'd appreciate any help.
Thanks, Greg
$ conda config --show
``` add_anaconda_token: True add_pip_as_python_dependency: True aggressive_update_packages: - ca-certificates - certifi - openssl allow_conda_downgrades: False allow_cycles: True allow_non_channel_urls: False allow_softlinks: False always_copy: False always_softlink: False always_yes: None anaconda_upload: None auto_activate_base: True auto_stack: 0 auto_update_conda: False bld_path: changeps1: True channel_alias: https://conda.anaconda.org channel_priority: strict channels: - https://public.dhe.ibm.com/ibmdl/export/pub/software/server/ibm-ai/conda/ - defaults client_ssl_cert: None client_ssl_cert_key: None clobber: False conda_build: {} create_default_packages: [] croot: /home/03076/gzynda/conda-bld custom_channels: pkgs/main: https://repo.anaconda.com pkgs/r: https://repo.anaconda.com pkgs/pro: https://repo.anaconda.com custom_multichannels: defaults: - https://repo.anaconda.com/pkgs/main - https://repo.anaconda.com/pkgs/r local: debug: False default_channels: - https://repo.anaconda.com/pkgs/main - https://repo.anaconda.com/pkgs/r default_python: 3.7 default_threads: 4 deps_modifier: not_set dev: False disallowed_packages: [] download_only: False dry_run: False enable_private_envs: False env_prompt: ({default_env}) envs_dirs: - /scratch/03076/gzynda/conda_local/envs - /scratch/apps/conda/4.8.3/envs - /home/03076/gzynda/.conda/envs error_upload_url: https://conda.io/conda-post/unexpected-error execute_threads: 4 extra_safety_checks: False force: False force_32bit: False force_reinstall: False force_remove: False ignore_pinned: False json: False local_repodata_ttl: 1 migrated_channel_aliases: [] migrated_custom_channels: {} non_admin_enabled: True notify_outdated_conda: True offline: False override_channels_enabled: True path_conflict: clobber pinned_packages: [] pip_interop_enabled: False pkgs_dirs: - /scratch/03076/gzynda/conda_local/pkgs - /scratch/apps/conda/4.8.3/pkgs proxy_servers: {} quiet: False remote_backoff_factor: 1 remote_connect_timeout_secs: 9.15 remote_max_retries: 3 remote_read_timeout_secs: 60.0 repodata_fns: - current_repodata.json - repodata.json repodata_threads: 4 report_errors: None restore_free_channel: False rollback_enabled: True root_prefix: /scratch/apps/conda/4.8.3 safety_checks: warn sat_solver: pycosat separate_format_cache: False shortcuts: True show_channel_urls: None solver_ignore_timestamps: False ssl_verify: True subdir: linux-ppc64le subdirs: - linux-ppc64le - noarch target_prefix_override: track_features: [] unsatisfiable_hints: True unsatisfiable_hints_check_depth: 2 update_modifier: update_specs use_index_cache: False use_local: False use_only_tar_bz2: False verbosity: 0 verify_threads: 4 whitelist_channels: [] ```$ conda create -n pai17 python=3 powerai=1.7
``` Collecting package metadata (current_repodata.json): done Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: done ## Package Plan ## environment location: /scratch/03076/gzynda/conda_local/envs/pai17 added / updated specs: - powerai=1.7 - python=3 The following NEW packages will be INSTALLED: _libgcc_mutex pkgs/main/linux-ppc64le::_libgcc_mutex-0.1-main _py-xgboost-mutex ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::_py-xgboost-mutex-1.0-gpu_645.ge505a9a _pytorch_select ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::_pytorch_select-2.0-gpu_21940.g1a3a219 _tflow_select ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::_tflow_select-2.1.0-gpu_929.g59c9804 absl-py pkgs/main/linux-ppc64le::absl-py-0.8.1-py37_0 apex ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::apex-0.1.0_1.7.0-py37_662.gb1ba068 astor pkgs/main/linux-ppc64le::astor-0.8.0-py37_0 atomicwrites pkgs/main/noarch::atomicwrites-1.4.0-py_0 attrs pkgs/main/noarch::attrs-19.3.0-py_0 blas pkgs/main/linux-ppc64le::blas-1.0-openblas bokeh pkgs/main/linux-ppc64le::bokeh-1.4.0-py37_0 boost pkgs/main/linux-ppc64le::boost-1.67.0-py37_4 brotlipy pkgs/main/linux-ppc64le::brotlipy-0.7.0-py37h7b6447c_1000 bzip2 pkgs/main/linux-ppc64le::bzip2-1.0.8-h7b6447c_0 c-ares pkgs/main/linux-ppc64le::c-ares-1.15.0-h7b6447c_1001 ca-certificates pkgs/main/linux-ppc64le::ca-certificates-2020.6.24-0 caffe ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::caffe-1.0_1.7.0-5247.g03f78fb caffe-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::caffe-base-1.0_1.7.0-gpu_py37_5247.g03f78fb cairo pkgs/main/linux-ppc64le::cairo-1.14.12-h8948797_3 certifi pkgs/main/linux-ppc64le::certifi-2020.6.20-py37_0 cffi pkgs/main/linux-ppc64le::cffi-1.12.3-py37h2e261b9_0 chardet pkgs/main/linux-ppc64le::chardet-3.0.4-py37_1003 click pkgs/main/linux-ppc64le::click-7.0-py37_0 cloudpickle pkgs/main/noarch::cloudpickle-1.2.2-py_0 coverage pkgs/main/linux-ppc64le::coverage-4.5.4-py37h7b6447c_0 cryptography pkgs/main/linux-ppc64le::cryptography-2.9.2-py37h1ba5d50_0 cudatoolkit ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::cudatoolkit-10.2.89-680.g0f7a43a cudnn ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::cudnn-7.6.5_10.2-650.g338a052 cxxfilt ibmdl/export/pub/software/server/ibm-ai/conda/noarch::cxxfilt-0.2.0-py_622.gbc2955e cycler pkgs/main/linux-ppc64le::cycler-0.10.0-py37_0 cytoolz pkgs/main/linux-ppc64le::cytoolz-0.10.1-py37h7b6447c_0 dask pkgs/main/noarch::dask-2.9.2-py_0 dask-core pkgs/main/noarch::dask-core-2.9.2-py_0 dask-cuda ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::dask-cuda-0.11.0-py37_630.g2290d8e dask-xgboost ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::dask-xgboost-0.1.9-py37_647.g2eb49b6 ddl ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::ddl-1.5.1-py37_1364.ged89432 ddl-tensorflow ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::ddl-tensorflow-1.5.1-py37_1073.g105e407 decorator pkgs/main/noarch::decorator-4.4.2-py_0 distributed pkgs/main/noarch::distributed-2.9.3-py_0 ffmpeg pkgs/main/linux-ppc64le::ffmpeg-4.2.2-h20bf706_0 fontconfig pkgs/main/linux-ppc64le::fontconfig-2.13.0-h9420a91_0 freeglut pkgs/main/linux-ppc64le::freeglut-3.0.0-hf484d3e_5 freetype pkgs/main/linux-ppc64le::freetype-2.9.1-h8a8886c_0 fsspec pkgs/main/noarch::fsspec-0.7.4-py_0 future pkgs/main/linux-ppc64le::future-0.17.1-py37_0 gast pkgs/main/linux-ppc64le::gast-0.2.2-py37_0 gflags ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::gflags-2.2.2-1679.g1bcb8ab giflib pkgs/main/linux-ppc64le::giflib-5.1.4-h14c3975_1 glib pkgs/main/linux-ppc64le::glib-2.63.1-h5a9c865_0 glog ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::glog-0.3.5-1668.g110e904 gmp pkgs/main/linux-ppc64le::gmp-6.1.2-h7f7056e_2 gnutls pkgs/main/linux-ppc64le::gnutls-3.6.5-h71b1129_1002 google-pasta ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::google-pasta-0.1.8-py37_622.gd00f35a graphite2 pkgs/main/linux-ppc64le::graphite2-1.3.14-h23475e2_0 graphsurgeon ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::graphsurgeon-0.4.1-py37_697.g9922bde grpcio pkgs/main/linux-ppc64le::grpcio-1.16.1-py37hf8bcb03_1 h5py pkgs/main/linux-ppc64le::h5py-2.8.0-py37h8d01980_0 harfbuzz pkgs/main/linux-ppc64le::harfbuzz-1.8.8-hffaf4a1_0 hdf5 pkgs/main/linux-ppc64le::hdf5-1.10.2-hba1933b_1 heapdict pkgs/main/noarch::heapdict-1.0.1-py_0 horovod ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::horovod-0.19.0-py37_1105.g5e1e5d1 hypothesis pkgs/main/linux-ppc64le::hypothesis-3.59.1-py37h39e3cac_0 icu pkgs/main/linux-ppc64le::icu-58.2-he6710b0_3 idna pkgs/main/linux-ppc64le::idna-2.8-py37_0 imageio pkgs/main/noarch::imageio-2.9.0-py_0 importlib-metadata pkgs/main/linux-ppc64le::importlib-metadata-1.7.0-py37_0 importlib_metadata pkgs/main/noarch::importlib_metadata-1.7.0-0 jasper pkgs/main/linux-ppc64le::jasper-2.0.14-h07fcdf6_1 jinja2 pkgs/main/noarch::jinja2-2.11.2-py_0 joblib pkgs/main/linux-ppc64le::joblib-0.13.2-py37_0 jpeg pkgs/main/linux-ppc64le::jpeg-9b-hcb7ba68_2 keras-applications pkgs/main/noarch::keras-applications-1.0.8-py_1 keras-preprocessi~ pkgs/main/noarch::keras-preprocessing-1.1.0-py_1 kiwisolver pkgs/main/linux-ppc64le::kiwisolver-1.2.0-py37hfd86e86_0 lame pkgs/main/linux-ppc64le::lame-3.100-h7b6447c_0 ld_impl_linux-ppc~ pkgs/main/linux-ppc64le::ld_impl_linux-ppc64le-2.33.1-h0f24833_7 leveldb pkgs/main/linux-ppc64le::leveldb-1.20-hf484d3e_1 libboost pkgs/main/linux-ppc64le::libboost-1.67.0-h46d08c1_4 libedit pkgs/main/linux-ppc64le::libedit-3.1.20191231-h14c3975_1 libffi pkgs/main/linux-ppc64le::libffi-3.2.1-hf62a594_5 libgcc-ng pkgs/main/linux-ppc64le::libgcc-ng-8.2.0-h822a55f_1 libgfortran-ng pkgs/main/linux-ppc64le::libgfortran-ng-7.3.0-h822a55f_1 libglu pkgs/main/linux-ppc64le::libglu-9.0.0-hf484d3e_1 libopenblas pkgs/main/linux-ppc64le::libopenblas-0.3.6-h5a2b251_1 libopencv ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::libopencv-3.4.8-py37_784.g5a642ca libopus pkgs/main/linux-ppc64le::libopus-1.3.1-h7b6447c_0 libpng pkgs/main/linux-ppc64le::libpng-1.6.36-hbc83047_0 libprotobuf ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::libprotobuf-3.8.0-634.g08dc819 libstdcxx-ng pkgs/main/linux-ppc64le::libstdcxx-ng-8.2.0-h822a55f_1 libtiff pkgs/main/linux-ppc64le::libtiff-4.1.0-h2733197_1 libuuid pkgs/main/linux-ppc64le::libuuid-1.0.3-h1bed415_2 libvpx pkgs/main/linux-ppc64le::libvpx-1.7.0-hf484d3e_0 libwebp pkgs/main/linux-ppc64le::libwebp-1.0.1-h8e7db2f_0 libxcb pkgs/main/linux-ppc64le::libxcb-1.14-h7b6447c_0 libxgboost-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::libxgboost-base-0.90-gpu_645.ge505a9a libxml2 pkgs/main/linux-ppc64le::libxml2-2.9.10-he19cac6_1 llvmlite pkgs/main/linux-ppc64le::llvmlite-0.31.0-py37hd408876_0 lmdb pkgs/main/linux-ppc64le::lmdb-0.9.22-hf484d3e_1 locket pkgs/main/linux-ppc64le::locket-0.2.0-py37_1 lz4-c pkgs/main/linux-ppc64le::lz4-c-1.9.2-he6710b0_0 markdown pkgs/main/linux-ppc64le::markdown-3.1.1-py37_0 markupsafe pkgs/main/linux-ppc64le::markupsafe-1.1.1-py37h7b6447c_0 matplotlib pkgs/main/linux-ppc64le::matplotlib-3.0.3-py37h5429711_0 mock pkgs/main/linux-ppc64le::mock-3.0.5-py37_0 more-itertools pkgs/main/noarch::more-itertools-8.4.0-py_0 msgpack-python pkgs/main/linux-ppc64le::msgpack-python-1.0.0-py37hfd86e86_1 nccl ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::nccl-2.5.6-645.g51c2e94 ncurses pkgs/main/linux-ppc64le::ncurses-6.2-he6710b0_1 nettle pkgs/main/linux-ppc64le::nettle-3.4.1-hbb512f6_0 networkx pkgs/main/noarch::networkx-2.3-py_0 ninja pkgs/main/linux-ppc64le::ninja-1.9.0-py37hfd86e86_0 nomkl pkgs/main/linux-ppc64le::nomkl-3.0-0 numactl ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::numactl-2.0.12-628.gb5e1afd numba pkgs/main/linux-ppc64le::numba-0.47.0-py37h962f231_0 numpy pkgs/main/linux-ppc64le::numpy-1.17.4-py37hd5be1e1_0 numpy-base pkgs/main/linux-ppc64le::numpy-base-1.17.4-py37h2f8d375_0 olefile pkgs/main/linux-ppc64le::olefile-0.46-py37_0 onnx ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::onnx-1.6.0-py37_671.g75d3229 openblas pkgs/main/linux-ppc64le::openblas-0.3.6-1 openblas-devel pkgs/main/linux-ppc64le::openblas-devel-0.3.6-1 opencv ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::opencv-3.4.8-py37_784.g5a642ca openh264 pkgs/main/linux-ppc64le::openh264-2.1.0-hd408876_0 openssl pkgs/main/linux-ppc64le::openssl-1.1.1g-h7b6447c_0 opt_einsum pkgs/main/noarch::opt_einsum-3.1.0-py_0 packaging pkgs/main/noarch::packaging-20.4-py_0 pai4sk ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::pai4sk-1.6.0-py37_1156.g99299fc pandas pkgs/main/linux-ppc64le::pandas-1.0.5-py37h0573a6f_0 partd pkgs/main/noarch::partd-1.1.0-py_0 pciutils ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::pciutils-3.6.2-627.g804ec60 pcre pkgs/main/linux-ppc64le::pcre-8.44-he6710b0_0 pillow pkgs/main/linux-ppc64le::pillow-7.1.2-py37haac5956_0 pip pkgs/main/linux-ppc64le::pip-20.1.1-py37_1 pixman pkgs/main/linux-ppc64le::pixman-0.40.0-h7b6447c_0 pluggy pkgs/main/linux-ppc64le::pluggy-0.13.1-py37_0 powerai ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::powerai-1.7.0-679.g5b5a006 powerai-license ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::powerai-license-1.7.0-778.g91a0fd9 powerai-release ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::powerai-release-1.7.0-627.g1c389a2 powerai-tools ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::powerai-tools-1.7.0-623.g843ad38 protobuf ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::protobuf-3.8.0-py37_642.gdc7b773 psutil pkgs/main/linux-ppc64le::psutil-5.6.7-py37h7b6447c_0 py pkgs/main/noarch::py-1.9.0-py_0 py-boost pkgs/main/linux-ppc64le::py-boost-1.67.0-py37h04863e7_4 py-opencv ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::py-opencv-3.4.8-py37_784.g5a642ca py-xgboost-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::py-xgboost-base-0.90-gpu_py37_645.ge505a9a py-xgboost-gpu ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::py-xgboost-gpu-0.90-645.ge505a9a pycparser pkgs/main/noarch::pycparser-2.20-py_2 pynvml ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::pynvml-8.0.3-py37_618.g443d2aa pyopenssl pkgs/main/noarch::pyopenssl-19.1.0-py_1 pyparsing pkgs/main/noarch::pyparsing-2.4.7-py_0 pysocks pkgs/main/linux-ppc64le::pysocks-1.7.1-py37_1 pytest pkgs/main/linux-ppc64le::pytest-4.4.2-py37_0 python pkgs/main/linux-ppc64le::python-3.7.7-ha29dc6b_0_cpython python-dateutil pkgs/main/noarch::python-dateutil-2.8.1-py_0 python-lmdb pkgs/main/linux-ppc64le::python-lmdb-0.98-py37he6710b0_0 pytorch ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::pytorch-1.3.1-21940.g1a3a219 pytorch-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::pytorch-base-1.3.1-gpu_py37_21940.g1a3a219 pytz pkgs/main/noarch::pytz-2020.1-py_0 pywavelets pkgs/main/linux-ppc64le::pywavelets-1.1.1-py37h7b6447c_0 pyyaml pkgs/main/linux-ppc64le::pyyaml-5.3.1-py37h7b6447c_1 readline pkgs/main/linux-ppc64le::readline-8.0-h7b6447c_0 requests pkgs/main/linux-ppc64le::requests-2.22.0-py37_1 scikit-image pkgs/main/linux-ppc64le::scikit-image-0.15.0-py37he6710b0_0 scikit-learn pkgs/main/linux-ppc64le::scikit-learn-0.22.1-py37h22eb022_0 scipy pkgs/main/linux-ppc64le::scipy-1.3.1-py37he2b7bc3_0 setuptools pkgs/main/linux-ppc64le::setuptools-49.2.0-py37_0 simsearch ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::simsearch-1.6.0-py37_882.ga3f4a67 six pkgs/main/linux-ppc64le::six-1.13.0-py37_0 snapml-spark ibmdl/export/pub/software/server/ibm-ai/conda/noarch::snapml-spark-1.6.0-py_1020.gc01d7a8 snappy pkgs/main/linux-ppc64le::snappy-1.1.7-h1532aa0_3 sortedcontainers pkgs/main/noarch::sortedcontainers-2.2.2-py_0 spectrum-mpi ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::spectrum-mpi-10.03-678.ga72dafb sqlite pkgs/main/linux-ppc64le::sqlite-3.32.3-hbc83047_0 tabulate pkgs/main/linux-ppc64le::tabulate-0.8.2-py37_0 tbb pkgs/main/linux-ppc64le::tbb-2020.0-hfd86e86_0 tblib pkgs/main/noarch::tblib-1.6.0-py_0 tensorboard ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorboard-2.1.0-py37_3dc74fe_3959.g2372771 tensorflow ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-2.1.1-gpu_py37_934.g2372771 tensorflow-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-base-2.1.1-gpu_py37_3ffdb91_72692.g44a6283 tensorflow-benchm~ ibmdl/export/pub/software/server/ibm-ai/conda/noarch::tensorflow-benchmarks-0.1-gpu_py_627.gb971bf9 tensorflow-estima~ ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-estimator-2.1.0-py37_7ec4e5d_1477.g59c9804 tensorflow-gpu ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-gpu-2.1.1-934.g2372771 tensorflow-probab~ ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-probability-0.9.0-py37_356cfdd_3242.g59c9804 tensorflow-servin~ ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorflow-serving-api-2.1.0-py37_d83512c_5308.gf3d82d3 tensorrt ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::tensorrt-7.0.0.11-py37_697.g9922bde termcolor pkgs/main/linux-ppc64le::termcolor-1.1.0-py37_1 tk pkgs/main/linux-ppc64le::tk-8.6.10-hbc83047_0 toolz pkgs/main/noarch::toolz-0.10.0-py_0 torchtext ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::torchtext-0.4.0-py37_633.g16a90d7 torchvision-base ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::torchvision-base-0.4.2-gpu_py37_661.g37d5d4d tornado pkgs/main/linux-ppc64le::tornado-6.0.4-py37h7b6447c_1 tqdm pkgs/main/noarch::tqdm-4.36.1-py_0 typing pkgs/main/linux-ppc64le::typing-3.6.4-py37_0 uff ibmdl/export/pub/software/server/ibm-ai/conda/linux-ppc64le::uff-0.6.5-py37_697.g9922bde urllib3 pkgs/main/noarch::urllib3-1.25.9-py_0 werkzeug pkgs/main/noarch::werkzeug-0.16.0-py_0 wheel pkgs/main/linux-ppc64le::wheel-0.34.2-py37_0 wrapt pkgs/main/linux-ppc64le::wrapt-1.11.2-py37h7b6447c_0 x264 pkgs/main/linux-ppc64le::x264-1!157.20191217-h7b6447c_0 xz pkgs/main/linux-ppc64le::xz-5.2.5-h7b6447c_0 yaml pkgs/main/linux-ppc64le::yaml-0.2.5-h7b6447c_0 zict pkgs/main/noarch::zict-2.0.0-py_0 zipp pkgs/main/noarch::zipp-3.1.0-py_0 zlib pkgs/main/linux-ppc64le::zlib-1.2.11-h7b6447c_3 zstd pkgs/main/linux-ppc64le::zstd-1.4.5-h0b5b093_0 Proceed ([y]/n)? y Preparing transaction: done Verifying transaction: done Executing transaction: done # # To activate this environment, use # # $ conda activate pai17 # # To deactivate an active environment, use # # $ conda deactivate ```$ conda activate pai17
``` Collecting mpi4py Using cached mpi4py-3.0.3.tar.gz (1.4 MB) Building wheels for collected packages: mpi4py Building wheel for mpi4py (setup.py) ... error ERROR: Command errored out with exit status 1: command: /scratch/03076/gzynda/conda_local/envs/pai17/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tjsbidsb cwd: /tmp/pip-install-j_4pv84w/mpi4py/ Complete output (134 lines): running bdist_wheel running build running build_src running build_py creating build creating build/lib.linux-ppc64le-3.7 creating build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/run.py -> build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/__main__.py -> build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/bench.py -> build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/__init__.py -> build/lib.linux-ppc64le-3.7/mpi4py creating build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/__main__.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/_base.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/server.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/pool.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/_lib.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/__init__.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/aplus.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/MPI.pxd -> build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/__init__.pxd -> build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/libmpi.pxd -> build/lib.linux-ppc64le-3.7/mpi4py creating build/lib.linux-ppc64le-3.7/mpi4py/include creating build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py running build_clib MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc MPI C++ compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicxx MPI F compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpifort MPI F90 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif90 MPI F77 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif77 checking for library 'lmpe' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'mpe' dylib library creating build/temp.linux-ppc64le-3.7 creating build/temp.linux-ppc64le-3.7/src creating build/temp.linux-ppc64le-3.7/src/lib-pmpi /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/mpe.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "mpe" failed checking for library 'vt-mpi' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt' dylib library /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt" failed checking for library 'vt-mpi' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt-mpi' dylib library /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt-mpi.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt-mpi" failed checking for library 'vt-hyb' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.ompi' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt-hyb' dylib library /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt-hyb.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt-hyb" failed running build_ext MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc MPI C++ compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicxx MPI F compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpifort MPI F90 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif90 MPI F77 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif77 checking for dlopen() availability ... checking for header 'dlfcn.h' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! checking for library 'dl' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'dlopen' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest building 'mpi4py.dl' extension gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c src/dynload.c -o build/temp.linux-ppc64le-3.7/src/dynload.o gcc -pthread -shared -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -L/scratch/03076/gzynda/conda_local/envs/pai17/lib -Wl,-rpath=/scratch/03076/gzynda/conda_local/envs/pai17/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-ppc64le-3.7/src/dynload.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o build/lib.linux-ppc64le-3.7/mpi4py/dl.cpython-37m-powerpc64le-linux-gnu.so checking for MPI compile and link ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o error: Cannot compile MPI programs. Check your configuration!!! ---------------------------------------- ERROR: Failed building wheel for mpi4py Running setup.py clean for mpi4py Failed to build mpi4py Installing collected packages: mpi4py Running setup.py install for mpi4py ... error ERROR: Command errored out with exit status 1: command: /scratch/03076/gzynda/conda_local/envs/pai17/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-2c9mz01o/install-record.txt --single-version-externally-managed --compile --install-headers /scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m/mpi4py cwd: /tmp/pip-install-j_4pv84w/mpi4py/ Complete output (134 lines): running install running build running build_src running build_py creating build creating build/lib.linux-ppc64le-3.7 creating build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/run.py -> build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/__main__.py -> build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/bench.py -> build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/__init__.py -> build/lib.linux-ppc64le-3.7/mpi4py creating build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/__main__.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/_base.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/server.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/pool.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/_lib.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/__init__.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/futures/aplus.py -> build/lib.linux-ppc64le-3.7/mpi4py/futures copying src/mpi4py/MPI.pxd -> build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/__init__.pxd -> build/lib.linux-ppc64le-3.7/mpi4py copying src/mpi4py/libmpi.pxd -> build/lib.linux-ppc64le-3.7/mpi4py creating build/lib.linux-ppc64le-3.7/mpi4py/include creating build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-ppc64le-3.7/mpi4py/include/mpi4py running build_clib MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc MPI C++ compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicxx MPI F compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpifort MPI F90 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif90 MPI F77 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif77 checking for library 'lmpe' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'mpe' dylib library creating build/temp.linux-ppc64le-3.7 creating build/temp.linux-ppc64le-3.7/src creating build/temp.linux-ppc64le-3.7/src/lib-pmpi /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/mpe.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "mpe" failed checking for library 'vt-mpi' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt' dylib library /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt" failed checking for library 'vt-mpi' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt-mpi' dylib library /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt-mpi.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt-mpi" failed checking for library 'vt-hyb' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.ompi' ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt-hyb' dylib library /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-ppc64le-3.7/src/lib-pmpi/vt-hyb.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt-hyb" failed running build_ext MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc MPI C++ compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicxx MPI F compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpifort MPI F90 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif90 MPI F77 compiler: /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpif77 checking for dlopen() availability ... checking for header 'dlfcn.h' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! checking for library 'dl' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'dlopen' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest building 'mpi4py.dl' extension gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c src/dynload.c -o build/temp.linux-ppc64le-3.7/src/dynload.o gcc -pthread -shared -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -L/scratch/03076/gzynda/conda_local/envs/pai17/lib -Wl,-rpath=/scratch/03076/gzynda/conda_local/envs/pai17/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-ppc64le-3.7/src/dynload.o -Lbuild/temp.linux-ppc64le-3.7 -ldl -o build/lib.linux-ppc64le-3.7/mpi4py/dl.cpython-37m-powerpc64le-linux-gnu.so checking for MPI compile and link ... /scratch/03076/gzynda/conda_local/envs/pai17/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/pai17/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o error: Cannot compile MPI programs. Check your configuration!!! ---------------------------------------- ERROR: Command errored out with exit status 1: /scratch/03076/gzynda/conda_local/envs/pai17/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-j_4pv84w/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-2c9mz01o/install-record.txt --single-version-externally-managed --compile --install-headers /scratch/03076/gzynda/conda_local/envs/pai17/include/python3.7m/mpi4py Check the logs for full command output. ```(pai17) $ pip install mpi4py
Compiling it using the system spectrum MPI in a new python3 environment with only setuptools and wheel also fails.
$ conda create -n py3 python=3 setuptools wheel
``` Collecting mpi4py Using cached mpi4py-3.0.3.tar.gz (1.4 MB) Building wheels for collected packages: mpi4py Building wheel for mpi4py (setup.py) ... error ERROR: Command errored out with exit status 1: command: /scratch/03076/gzynda/conda_local/envs/py3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-xg6jrxrt cwd: /tmp/pip-install-v8o084bu/mpi4py/ Complete output (134 lines): running bdist_wheel running build running build_src running build_py creating build creating build/lib.linux-ppc64le-3.8 creating build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/run.py -> build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/__main__.py -> build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/bench.py -> build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/__init__.py -> build/lib.linux-ppc64le-3.8/mpi4py creating build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/__main__.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/_base.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/server.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/pool.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/_lib.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/__init__.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/aplus.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/MPI.pxd -> build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/__init__.pxd -> build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/libmpi.pxd -> build/lib.linux-ppc64le-3.8/mpi4py creating build/lib.linux-ppc64le-3.8/mpi4py/include creating build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py running build_clib MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /opt/ibm/spectrum_mpi/bin/mpicc MPI C++ compiler: /opt/ibm/spectrum_mpi/bin/mpicxx MPI F compiler: /opt/ibm/spectrum_mpi/bin/mpifort MPI F90 compiler: /opt/ibm/spectrum_mpi/bin/mpif90 MPI F77 compiler: /opt/ibm/spectrum_mpi/bin/mpif77 checking for library 'lmpe' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'mpe' dylib library creating build/temp.linux-ppc64le-3.8 creating build/temp.linux-ppc64le-3.8/src creating build/temp.linux-ppc64le-3.8/src/lib-pmpi /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/mpe.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "mpe" failed checking for library 'vt-mpi' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt' dylib library /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt" failed checking for library 'vt-mpi' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt-mpi' dylib library /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt-mpi.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt-mpi" failed checking for library 'vt-hyb' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.ompi' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt-hyb' dylib library /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt-hyb.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt-hyb" failed running build_ext MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /opt/ibm/spectrum_mpi/bin/mpicc MPI C++ compiler: /opt/ibm/spectrum_mpi/bin/mpicxx MPI F compiler: /opt/ibm/spectrum_mpi/bin/mpifort MPI F90 compiler: /opt/ibm/spectrum_mpi/bin/mpif90 MPI F77 compiler: /opt/ibm/spectrum_mpi/bin/mpif77 checking for dlopen() availability ... checking for header 'dlfcn.h' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! checking for library 'dl' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'dlopen' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest building 'mpi4py.dl' extension gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c src/dynload.c -o build/temp.linux-ppc64le-3.8/src/dynload.o gcc -pthread -shared -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -L/scratch/03076/gzynda/conda_local/envs/py3/lib -Wl,-rpath=/scratch/03076/gzynda/conda_local/envs/py3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-ppc64le-3.8/src/dynload.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o build/lib.linux-ppc64le-3.8/mpi4py/dl.cpython-38-powerpc64le-linux-gnu.so checking for MPI compile and link ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o error: Cannot compile MPI programs. Check your configuration!!! ---------------------------------------- ERROR: Failed building wheel for mpi4py Running setup.py clean for mpi4py Failed to build mpi4py Installing collected packages: mpi4py Running setup.py install for mpi4py ... error ERROR: Command errored out with exit status 1: command: /scratch/03076/gzynda/conda_local/envs/py3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-p8_jcrcb/install-record.txt --single-version-externally-managed --compile --install-headers /scratch/03076/gzynda/conda_local/envs/py3/include/python3.8/mpi4py cwd: /tmp/pip-install-v8o084bu/mpi4py/ Complete output (134 lines): running install running build running build_src running build_py creating build creating build/lib.linux-ppc64le-3.8 creating build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/run.py -> build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/__main__.py -> build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/bench.py -> build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/__init__.py -> build/lib.linux-ppc64le-3.8/mpi4py creating build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/__main__.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/_base.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/server.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/pool.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/_lib.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/__init__.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/futures/aplus.py -> build/lib.linux-ppc64le-3.8/mpi4py/futures copying src/mpi4py/MPI.pxd -> build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/__init__.pxd -> build/lib.linux-ppc64le-3.8/mpi4py copying src/mpi4py/libmpi.pxd -> build/lib.linux-ppc64le-3.8/mpi4py creating build/lib.linux-ppc64le-3.8/mpi4py/include creating build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-ppc64le-3.8/mpi4py/include/mpi4py running build_clib MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /opt/ibm/spectrum_mpi/bin/mpicc MPI C++ compiler: /opt/ibm/spectrum_mpi/bin/mpicxx MPI F compiler: /opt/ibm/spectrum_mpi/bin/mpifort MPI F90 compiler: /opt/ibm/spectrum_mpi/bin/mpif90 MPI F77 compiler: /opt/ibm/spectrum_mpi/bin/mpif77 checking for library 'lmpe' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'mpe' dylib library creating build/temp.linux-ppc64le-3.8 creating build/temp.linux-ppc64le-3.8/src creating build/temp.linux-ppc64le-3.8/src/lib-pmpi /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/mpe.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "mpe" failed checking for library 'vt-mpi' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt' dylib library /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt" failed checking for library 'vt-mpi' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt-mpi' dylib library /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt-mpi.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt-mpi" failed checking for library 'vt-hyb' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o checking for library 'vt.ompi' ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o building 'vt-hyb' dylib library /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-ppc64le-3.8/src/lib-pmpi/vt-hyb.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory warning: build_clib: command '/opt/ibm/spectrum_mpi/bin/mpicc' failed with exit status 255 warning: build_clib: building optional library "vt-hyb" failed running build_ext MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /opt/ibm/spectrum_mpi/bin/mpicc MPI C++ compiler: /opt/ibm/spectrum_mpi/bin/mpicxx MPI F compiler: /opt/ibm/spectrum_mpi/bin/mpifort MPI F90 compiler: /opt/ibm/spectrum_mpi/bin/mpif90 MPI F77 compiler: /opt/ibm/spectrum_mpi/bin/mpif77 checking for dlopen() availability ... checking for header 'dlfcn.h' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! checking for library 'dl' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'dlopen' ... gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o _configtest success! removing: _configtest.c _configtest.o _configtest building 'mpi4py.dl' extension gcc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c src/dynload.c -o build/temp.linux-ppc64le-3.8/src/dynload.o gcc -pthread -shared -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -L/scratch/03076/gzynda/conda_local/envs/py3/lib -Wl,-rpath=/scratch/03076/gzynda/conda_local/envs/py3/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-ppc64le-3.8/src/dynload.o -Lbuild/temp.linux-ppc64le-3.8 -ldl -o build/lib.linux-ppc64le-3.8/mpi4py/dl.cpython-38-powerpc64le-linux-gnu.so checking for MPI compile and link ... /opt/ibm/spectrum_mpi/bin/mpicc -pthread -B /scratch/03076/gzynda/conda_local/envs/py3/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/scratch/03076/gzynda/conda_local/envs/py3/include/python3.8 -c _configtest.c -o _configtest.o /opt/ibm/xlC/16.1.1/bin/.orig/xlc_r: error: 1501-221 cannot exec program /lib/o/xlCentry - No such file or directory failure. removing: _configtest.c _configtest.o error: Cannot compile MPI programs. Check your configuration!!! ---------------------------------------- ERROR: Command errored out with exit status 1: /scratch/03076/gzynda/conda_local/envs/py3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"'; __file__='"'"'/tmp/pip-install-v8o084bu/mpi4py/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-p8_jcrcb/install-record.txt --single-version-externally-managed --compile --install-headers /scratch/03076/gzynda/conda_local/envs/py3/include/python3.8/mpi4py Check the logs for full command output. ```$ conda activate py3
(py3) $ pip install mpi4py