search

ICAMS / python-ace

Other
57 stars 15 forks source link

YAML safe_load has been removed #60

Closed ale99WGiais closed 7 months ago

ale99WGiais commented 7 months ago

Hi

I just installed python-ace. While trying to use "pacemaker", i encountered the following fatal error: "AttributeError: safe_load() has been removed"

My fix was to replace the line with " yaml_loader = yaml.YAML(typ='safe', pure=True) args_yaml = yaml_loader.load(f) " directly in the file "/home/alessio/.conda/envs/ace/bin/pacemaker"

yury-lysogorskiy commented 7 months ago

Thank you for the info! What is your Python version ?

ale99WGiais commented 7 months ago

Hey

Here some info that can help you

(ace_gpu) @.*** ~]$ python --version Python 3.9.18

(ace_gpu) @.*** ~]$ conda list

packages in environment at /home/alessio/.conda/envs/ace_gpu:

#

Name Version Build Channel

_libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_kmp_llvm conda-forge _tflow_select 2.1.0 gpu anaconda abseil-cpp 20230802.0 h6a678d5_2 anaconda absl-py 0.15.0 pypi_0 pypi aiohttp 3.8.5 py39h5eee18b_0 anaconda aiosignal 1.2.0 pyhd3eb1b0_0 anaconda ase 3.22.1 pypi_0 pypi astor 0.8.1 py39h06a4308_0 anaconda astunparse 1.6.3 py_0 anaconda async-timeout 4.0.2 py39h06a4308_0 anaconda attrs 23.1.0 py39h06a4308_0 anaconda blas 1.0 mkl anaconda blinker 1.6.2 py39h06a4308_0 anaconda brotli-python 1.0.9 py39h6a678d5_7 anaconda c-ares 1.19.1 h5eee18b_0 anaconda ca-certificates 2023.7.22 hbcca054_0 conda-forge cachetools 4.2.2 pyhd3eb1b0_0 anaconda certifi 2023.7.22 py39h06a4308_0 anaconda cffi 1.15.1 py39h5eee18b_3 anaconda charset-normalizer 2.0.4 pyhd3eb1b0_0 anaconda click 8.1.7 py39h06a4308_0 anaconda contourpy 1.1.1 pypi_0 pypi cryptography 41.0.3 py39hdda0065_0 anaconda cudatoolkit 10.1.243 h6bb024c_0 anaconda cudnn 7.6.5 cuda10.1_0 anaconda cupti 10.1.168 0 anaconda cycler 0.12.1 pypi_0 pypi cython 3.0.5 pypi_0 pypi flatbuffers 1.12 pypi_0 pypi fonttools 4.44.0 pypi_0 pypi frozenlist 1.4.0 py39h5eee18b_0 anaconda gast 0.3.3 pypi_0 pypi google-auth 2.22.0 py39h06a4308_0 anaconda google-auth-oauthlib 0.4.6 pypi_0 pypi google-pasta 0.2.0 pyhd3eb1b0_0 anaconda gputil 1.4.0 pyh9f0ad1d_0 conda-forge grpc-cpp 1.48.2 he1ff14a_3 anaconda grpcio 1.32.0 pypi_0 pypi gtest 1.14.0 hdb19cb5_0 anaconda h5py 2.10.0 py39hec9cf62_0 anaconda hdf5 1.10.6 h3ffc7dd_1 anaconda idna 3.4 py39h06a4308_0 anaconda importlib-metadata 6.0.0 py39h06a4308_0 anaconda intel-openmp 2023.1.0 hdb19cb5_46305 anaconda joblib 1.3.2 pypi_0 pypi keras-preprocessing 1.1.2 pyhd3eb1b0_0 anaconda kiwisolver 1.4.5 pypi_0 pypi ld_impl_linux-64 2.38 h1181459_1 libffi 3.4.4 h6a678d5_0 libgcc-ng 13.2.0 h807b86a_2 conda-forge libgfortran-ng 11.2.0 h00389a5_1 anaconda libgfortran5 11.2.0 h1234567_1 anaconda libprotobuf 3.20.3 he621ea3_0 anaconda libstdcxx-ng 11.2.0 h1234567_1 libzlib 1.2.13 hd590300_5 conda-forge llvm-openmp 14.0.6 h9e868ea_0 markdown 3.4.1 py39h06a4308_0 anaconda markupsafe 2.1.1 py39h7f8727e_0 anaconda matplotlib 3.6.3 pypi_0 pypi maxvolpy 0.3.8 pypi_0 pypi micromamba 1.5.1 1 conda-forge mkl 2023.1.0 h213fc3f_46343 anaconda mkl-service 2.4.0 py39h5eee18b_1 anaconda mkl_fft 1.3.8 py39h5eee18b_0 anaconda mkl_random 1.2.4 py39hdb19cb5_0 anaconda multidict 6.0.2 py39h5eee18b_0 anaconda ncurses 6.4 h6a678d5_0 numpy 1.19.5 pypi_0 pypi oauthlib 3.2.2 py39h06a4308_0 anaconda openssl 3.1.4 hd590300_0 conda-forge opt_einsum 3.3.0 pyhd3eb1b0_1 anaconda packaging 23.2 pypi_0 pypi pandas 1.4.4 pypi_0 pypi pillow 10.1.0 pypi_0 pypi pip 23.3 py39h06a4308_0 protobuf 3.20.3 py39h6a678d5_0 anaconda psutil 5.9.6 pypi_0 pypi pyace 0.2.7+129.g809804b pypi_0 pypi pyasn1 0.4.8 pyhd3eb1b0_0 anaconda pyasn1-modules 0.2.8 py_0 anaconda pycparser 2.21 pyhd3eb1b0_0 anaconda pyjwt 2.4.0 py39h06a4308_0 anaconda pyopenssl 23.2.0 py39h06a4308_0 anaconda pyparsing 3.1.1 pypi_0 pypi pysocks 1.7.1 py39h06a4308_0 anaconda python 3.9.18 h955ad1f_0 python-dateutil 2.8.2 pypi_0 pypi pytz 2023.3.post1 pypi_0 pypi re2 2022.04.01 h295c915_0 anaconda readline 8.2 h5eee18b_0 requests 2.31.0 py39h06a4308_0 anaconda requests-oauthlib 1.3.0 py_0 anaconda rsa 4.7.2 pyhd3eb1b0_1 anaconda ruamel-yaml 0.18.5 pypi_0 pypi ruamel-yaml-clib 0.2.8 pypi_0 pypi scikit-learn 1.3.2 pypi_0 pypi scipy 1.10.1 pypi_0 pypi setuptools 68.0.0 py39h06a4308_0 six 1.15.0 pypi_0 pypi sqlite 3.41.2 h5eee18b_0 tbb 2021.8.0 hdb19cb5_0 anaconda tensorboard 2.11.2 pypi_0 pypi tensorboard-data-server 0.6.1 pypi_0 pypi tensorboard-plugin-wit 1.8.1 py39h06a4308_0 anaconda tensorflow 2.4.1 gpu_py39h8236f22_0 anaconda tensorflow-base 2.4.1 gpu_py39h29c2da4_0 anaconda tensorflow-estimator 2.4.0 pypi_0 pypi tensorflow-gpu 2.4.1 h30adc30_0 anaconda tensorpotential 0.2.0+19.gfa5b8b0 pypi_0 pypi termcolor 1.1.0 pypi_0 pypi threadpoolctl 3.2.0 pypi_0 pypi tk 8.6.12 h1ccaba5_0 typing-extensions 3.7.4.3 pypi_0 pypi tzdata 2023c h04d1e81_0 urllib3 1.26.18 py39h06a4308_0 anaconda werkzeug 2.2.3 py39h06a4308_0 anaconda wheel 0.41.2 py39h06a4308_0 wrapt 1.12.1 pypi_0 pypi xz 5.4.2 h5eee18b_0 yarl 1.8.1 py39h5eee18b_0 anaconda zipp 3.11.0 py39h06a4308_0 anaconda zlib 1.2.13 hd590300_5 conda-forge

Il giorno gio 9 nov 2023 alle ore 19:09 yury-lysogorskiy < @.***> ha scritto:

Thank you for the info! What is your Python version ?

— Reply to this email directly, view it on GitHub https://github.com/ICAMS/python-ace/issues/60#issuecomment-1804315181, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACHY4L3M7DHHILNZOKVHK63YDUL45AVCNFSM6AAAAAA7EZGN4CVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBUGMYTKMJYGE . You are receiving this because you authored the thread.Message ID: @.***>

yury-lysogorskiy commented 7 months ago

Addressed in Feature/zbl #61