gradient check CLI: allow specifying parameter index/ID

ICB-DCM / parPE

Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

MIT License

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Open dweindl opened 3 years ago

dweindl commented 3 years ago

For large problems, it would be convenient if specific parameters could be selected for gradient check via the command line interface.

[ ] Update gradient checker to accept a list of parameter IDs
[ ] Add CLI option / update arg parsing
[ ] Pass list of IDs through to gradient checker
[ ] Update GradientFunction to allow specifying parameter indices w.r.t. which gradient is to be computed
[ ] Set AMICI plist accordingly