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ICGC-TCGA-PanCancer / CGP-Somatic-Docker

Dockerised and simplified version of SeqWare-CGP-SomaticCore
GNU Affero General Public License v3.0
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Reference bundle for 38 #15

Closed W4RJ4 closed 6 years ago

W4RJ4 commented 6 years ago

Hi, I have a question regarding this workflows ability to work with 38 reference files? And if it's possible to run it with them, where i can find reference bundles for 38, or if you can point me to the method or tool that was used to generate these existing 37 reference bundles. Thanks.

keiranmraine commented 6 years ago

Please see the version with ongoing support at https://github.com/cancerit/dockstore-cgpwgs

We hope to have the GRCh38 reference bundle out very soon. Feel free to raise an issue on that repository and I will ensure you are notified.

The version of BRASS in this frozen version will not be able to process GRCh38.