standard-output-names - Githubissues

ICGC-TCGA-PanCancer / CGP-Somatic-Docker

Dockerised and simplified version of SeqWare-CGP-SomaticCore

GNU Affero General Public License v3.0

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Closed lindaxiang closed 5 years ago

lindaxiang commented 5 years ago

expose the setting of run-id to cwl level and set the default of run-id to be SM retrieved from RG of the tumor bam header.
the output files are prefixed with PCAWG convention: ..