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ICGC-TCGA-PanCancer / OxoGWrapperWorkflow

This workflow is a wrapper around the OxoG component.
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Parameterize INIGenerator #10

Open SolomonShorser-OICR opened 8 years ago

SolomonShorser-OICR commented 8 years ago

Some values in the INI file could be parameters passed to the INIGenerator.

SolomonShorser-OICR commented 8 years ago

There are too many parameters to pass from the command line, so the "parameterization" is done directly in the ini generator script:

https://github.com/ICGC-TCGA-PanCancer/OxoGWrapperWorkflow/blob/develop/workflow/scripts/ini_generator.sh

Later, this can be extracted to a file that gets source'd in the main script.