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IDR / bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
http://www.openmicroscopy.org/site/products/bio-formats
GNU General Public License v2.0
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KLB backport #10

Closed jburel closed 5 years ago

jburel commented 5 years ago

Fix leak if single file

sbesson commented 5 years ago

Thanks. Merging and will test on prod60

sbesson commented 5 years ago

Tested on prod60 with only the read-write server patched with the fix.

Using one of the pattern-based KLB datasets (idr0051), the memo files were first deleted and the images were loading successfully via the viewer. The purple line corresponds to the readonly server i.e. without this fix showing the increase in file descriptors. The green line corresponds to the readwrite server and shows a temporary increase by a few descriptors which are eventually closed.

screen shot 2018-11-29 at 14 28 53

Overall looks good. Creating a new IDR Bio-Formats release for deployment onto prod60.