search

IDR / bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
http://www.openmicroscopy.org/site/products/bio-formats
GNU General Public License v2.0
0 stars 0 forks source link

Zeiss CZI: prevent index out of bounds when population positions #13

Closed sbesson closed 5 years ago

sbesson commented 5 years ago

Companion to https://github.com/openmicroscopy/bioformats/pull/3412 opened against the IDR fork of Bio-Formats

This PR is primarily intended to test the reading of idr0011/screenD using the ScreenReader and should not be merged. The tag for the upcoming upstream patch release of Bio-Formats should be merged instead.

sbesson commented 5 years ago

With this fix, a fresh import of the screen file for idr0011-ledesmafernandez-dad4/screenD results in a plate combining the individual CZI files as expected

Screen Shot 2019-07-31 at 11 43 41

Closing and we can discuss the timeline for a Bio-Formats 6.2.1 release that IDR 0.7.0 can consume next.