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IDR / bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
http://www.openmicroscopy.org/site/products/bio-formats
GNU General Public License v2.0
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CellWorX: add support for single site HCS variant #19

Closed sbesson closed 4 years ago

sbesson commented 4 years ago

The number of well samples/fields of view per well is computed from the total number of acquisition sites and the number of selected sites, determined by XSites, YSites and the SiteSelection entries in the HTD file.

For single site acquisitions (XSites=1, YSites=1), the SiteSelection1 key might be absent from the HTD files. This commit updates the reader to assume the single site is selected.

Ported to the mainline as https://github.com/ome/bioformats/pull/3540. This PR should be tested in the context of the idr0081 submission

sbesson commented 4 years ago

The corresponding mainline PR has been reviewed and merged together with representative samples. Merging and cutting another patch release of IDR Bio-Formats that can be used for prod82.